miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 4610 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 22173 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 59327 0.72 0.616765
Target:  5'- gCCGGCggcgccguaCCAGCCcgGCaUCggggGCGGAGCg -3'
miRNA:   3'- -GGUCG---------GGUCGGuaCG-AGaa--CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 109331 0.72 0.616765
Target:  5'- gCCuGCCCGGCCGacGCg---GCGGAGCa -3'
miRNA:   3'- -GGuCGGGUCGGUa-CGagaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 124986 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 17747 0.71 0.627317
Target:  5'- gCGGCCaCGGCCucgcGCUC--GCAGAGCa -3'
miRNA:   3'- gGUCGG-GUCGGua--CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 82656 0.71 0.627317
Target:  5'- gUCAGCuCCA-CCAUGCUCUggGCgaAGAACu -3'
miRNA:   3'- -GGUCG-GGUcGGUACGAGAa-CG--UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 50386 0.71 0.648424
Target:  5'- gCUGGCCgUGGCCAUGCUCgugcUGCGGuugguGCg -3'
miRNA:   3'- -GGUCGG-GUCGGUACGAGa---ACGUCu----UG- -5'
6504 3' -54.8 NC_001847.1 + 16911 0.71 0.648424
Target:  5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3'
miRNA:   3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 85037 0.7 0.679957
Target:  5'- cCCAGCCCGGCCcccaGCagCUgGCcGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua--CGa-GAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 98183 0.7 0.689355
Target:  5'- cCCAGUCCucuaggcAGCCGUGCgacggccGCGGAGCu -3'
miRNA:   3'- -GGUCGGG-------UCGGUACGagaa---CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 127850 0.7 0.690397
Target:  5'- -aGGCgCCGcGCCAgcgGCUCguacUGCGGAGCg -3'
miRNA:   3'- ggUCG-GGU-CGGUa--CGAGa---ACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 48169 0.7 0.690397
Target:  5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5'
6504 3' -54.8 NC_001847.1 + 55764 0.7 0.690397
Target:  5'- gCGGCCguGCCcugaguacggGCUCggGCGGAACu -3'
miRNA:   3'- gGUCGGguCGGua--------CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 97881 0.7 0.700786
Target:  5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3'
miRNA:   3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 53073 0.7 0.700786
Target:  5'- cCCAgacGCCgAGCCcgGCUCagcguucgGCGGGGCg -3'
miRNA:   3'- -GGU---CGGgUCGGuaCGAGaa------CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 87003 0.7 0.700786
Target:  5'- gCCGGCCCGGCgGUuaccugggccgcGC-CUcGCGGGACa -3'
miRNA:   3'- -GGUCGGGUCGgUA------------CGaGAaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 109437 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 38384 0.7 0.711113
Target:  5'- aCCGGCaCUGGCaCcgGCUUcgGCGGAGCc -3'
miRNA:   3'- -GGUCG-GGUCG-GuaCGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 6624 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.