Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 3' | -54.8 | NC_001847.1 | + | 109737 | 0.66 | 0.903136 |
Target: 5'- ---aCCUGGCCAaGCUCgaggGCGGGGCg -3' miRNA: 3'- ggucGGGUCGGUaCGAGaa--CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 109437 | 0.7 | 0.711113 |
Target: 5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3' miRNA: 3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 109331 | 0.72 | 0.616765 |
Target: 5'- gCCuGCCCGGCCGacGCg---GCGGAGCa -3' miRNA: 3'- -GGuCGGGUCGGUa-CGagaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 107423 | 0.72 | 0.606226 |
Target: 5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 106828 | 0.67 | 0.851867 |
Target: 5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3' miRNA: 3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 106049 | 0.73 | 0.543686 |
Target: 5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3' miRNA: 3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 105555 | 0.68 | 0.826596 |
Target: 5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3' miRNA: 3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 105171 | 0.68 | 0.817785 |
Target: 5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3' miRNA: 3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104667 | 0.68 | 0.790312 |
Target: 5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3' miRNA: 3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104324 | 0.66 | 0.903136 |
Target: 5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3' miRNA: 3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104164 | 0.69 | 0.741626 |
Target: 5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3' miRNA: 3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 103237 | 0.68 | 0.835218 |
Target: 5'- gCGGCCgCGGCCGUGaUCU-GCGGcGGCa -3' miRNA: 3'- gGUCGG-GUCGGUACgAGAaCGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 102045 | 0.66 | 0.896524 |
Target: 5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3' miRNA: 3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 101166 | 0.66 | 0.882569 |
Target: 5'- cCCAGCCCGGCCAgcgcGCcCggcGcCAGcGCg -3' miRNA: 3'- -GGUCGGGUCGGUa---CGaGaa-C-GUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 100830 | 0.66 | 0.9095 |
Target: 5'- cUCGGCCCGGgCG-GCUCcgGcCAGGGCc -3' miRNA: 3'- -GGUCGGGUCgGUaCGAGaaC-GUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 100608 | 0.74 | 0.503165 |
Target: 5'- gCAGCCCGGCCAgGCUCggGCccuGGCg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaaCGuc-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 100399 | 0.66 | 0.896524 |
Target: 5'- gCCAGCUCGGCC--GCgUCgaagGCGGAGu -3' miRNA: 3'- -GGUCGGGUCGGuaCG-AGaa--CGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 99756 | 0.66 | 0.9095 |
Target: 5'- gCCGGCCCGgcagugagccGCCGcgGCUUUggGCGGGGg -3' miRNA: 3'- -GGUCGGGU----------CGGUa-CGAGAa-CGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 99378 | 0.66 | 0.9095 |
Target: 5'- cCCAGCCUAGCaCAcacUGCgugugUGUAGGGg -3' miRNA: 3'- -GGUCGGGUCG-GU---ACGaga--ACGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 98183 | 0.7 | 0.689355 |
Target: 5'- cCCAGUCCucuaggcAGCCGUGCgacggccGCGGAGCu -3' miRNA: 3'- -GGUCGGG-------UCGGUACGagaa---CGUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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