miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 134086 0.72 0.606226
Target:  5'- aCAGCCCGgcGCCGccgcuUGCUCUggcgaGCAGAGg -3'
miRNA:   3'- gGUCGGGU--CGGU-----ACGAGAa----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 131451 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 131345 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 130475 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6504 3' -54.8 NC_001847.1 + 127941 0.74 0.473657
Target:  5'- aCGGCCCAGCCGcGCUCg---AGGACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaacgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 127850 0.7 0.690397
Target:  5'- -aGGCgCCGcGCCAgcgGCUCguacUGCGGAGCg -3'
miRNA:   3'- ggUCG-GGU-CGGUa--CGAGa---ACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 124986 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 120773 0.66 0.882569
Target:  5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3'
miRNA:   3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 118801 0.67 0.875234
Target:  5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3'
miRNA:   3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 117235 0.69 0.755569
Target:  5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3'
miRNA:   3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 115964 0.66 0.9095
Target:  5'- cCCcGCCCccGCCGUGCUgc-GCGGggUa -3'
miRNA:   3'- -GGuCGGGu-CGGUACGAgaaCGUCuuG- -5'
6504 3' -54.8 NC_001847.1 + 115775 0.72 0.574761
Target:  5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 112985 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6504 3' -54.8 NC_001847.1 + 112247 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 111307 0.66 0.882569
Target:  5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 109899 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.