miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 53073 0.7 0.700786
Target:  5'- cCCAgacGCCgAGCCcgGCUCagcguucgGCGGGGCg -3'
miRNA:   3'- -GGU---CGGgUCGGuaCGAGaa------CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 124986 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 17747 0.71 0.627317
Target:  5'- gCGGCCaCGGCCucgcGCUC--GCAGAGCa -3'
miRNA:   3'- gGUCGG-GUCGGua--CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 16911 0.71 0.648424
Target:  5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3'
miRNA:   3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 85037 0.7 0.679957
Target:  5'- cCCAGCCCGGCCcccaGCagCUgGCcGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua--CGa-GAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 98183 0.7 0.689355
Target:  5'- cCCAGUCCucuaggcAGCCGUGCgacggccGCGGAGCu -3'
miRNA:   3'- -GGUCGGG-------UCGGUACGagaa---CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 48169 0.7 0.690397
Target:  5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5'
6504 3' -54.8 NC_001847.1 + 55764 0.7 0.690397
Target:  5'- gCGGCCguGCCcugaguacggGCUCggGCGGAACu -3'
miRNA:   3'- gGUCGGguCGGua--------CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 97881 0.7 0.700786
Target:  5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3'
miRNA:   3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 59327 0.72 0.616765
Target:  5'- gCCGGCggcgccguaCCAGCCcgGCaUCggggGCGGAGCg -3'
miRNA:   3'- -GGUCG---------GGUCGGuaCG-AGaa--CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 107423 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 115775 0.72 0.574761
Target:  5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 67905 0.8 0.220402
Target:  5'- gCCGGCCCAGUgGUcGCUCUU-CAGGACg -3'
miRNA:   3'- -GGUCGGGUCGgUA-CGAGAAcGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 27904 0.79 0.268913
Target:  5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3'
miRNA:   3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 64155 0.75 0.435721
Target:  5'- gCGGCCC-GCCAUGCaggccgCUUGCGcGGACg -3'
miRNA:   3'- gGUCGGGuCGGUACGa-----GAACGU-CUUG- -5'
6504 3' -54.8 NC_001847.1 + 14381 0.74 0.473657
Target:  5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3'
miRNA:   3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 100608 0.74 0.503165
Target:  5'- gCAGCCCGGCCAgGCUCggGCccuGGCg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaaCGuc-UUG- -5'
6504 3' -54.8 NC_001847.1 + 96874 0.73 0.537534
Target:  5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3'
miRNA:   3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 106049 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 11566 0.72 0.56435
Target:  5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3'
miRNA:   3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.