Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 3' | -54.8 | NC_001847.1 | + | 88649 | 0.66 | 0.915613 |
Target: 5'- gCCuGCUCAG-CGUGCUgUUGCGcGACu -3' miRNA: 3'- -GGuCGGGUCgGUACGAgAACGUcUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 26535 | 0.67 | 0.875234 |
Target: 5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3' miRNA: 3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 33586 | 0.67 | 0.867668 |
Target: 5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3' miRNA: 3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 9434 | 1.11 | 0.002063 |
Target: 5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3' miRNA: 3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 115420 | 0.66 | 0.9095 |
Target: 5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3' miRNA: 3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 42020 | 0.66 | 0.9095 |
Target: 5'- gCAGCCCGGCCA-GCUUcgccCGGuACg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaac-GUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104324 | 0.66 | 0.903136 |
Target: 5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3' miRNA: 3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 109737 | 0.66 | 0.903136 |
Target: 5'- ---aCCUGGCCAaGCUCgaggGCGGGGCg -3' miRNA: 3'- ggucGGGUCGGUaCGAGaa--CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 120773 | 0.66 | 0.882569 |
Target: 5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3' miRNA: 3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 56845 | 0.67 | 0.875234 |
Target: 5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3' miRNA: 3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 111307 | 0.66 | 0.882569 |
Target: 5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3' miRNA: 3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 30674 | 0.66 | 0.889667 |
Target: 5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3' miRNA: 3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 65448 | 0.66 | 0.915613 |
Target: 5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3' miRNA: 3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 16472 | 0.67 | 0.875234 |
Target: 5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3' miRNA: 3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 35550 | 0.66 | 0.915013 |
Target: 5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3' miRNA: 3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 100399 | 0.66 | 0.896524 |
Target: 5'- gCCAGCUCGGCC--GCgUCgaagGCGGAGu -3' miRNA: 3'- -GGUCGGGUCGGuaCG-AGaa--CGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 118801 | 0.67 | 0.875234 |
Target: 5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3' miRNA: 3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 65667 | 0.67 | 0.874487 |
Target: 5'- gCCAGCCCGGCCA-------GCAGGAg -3' miRNA: 3'- -GGUCGGGUCGGUacgagaaCGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 115964 | 0.66 | 0.9095 |
Target: 5'- cCCcGCCCccGCCGUGCUgc-GCGGggUa -3' miRNA: 3'- -GGuCGGGu-CGGUACGAgaaCGUCuuG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 28532 | 0.66 | 0.9095 |
Target: 5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3' miRNA: 3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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