miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 52766 0.67 0.851867
Target:  5'- aCCAGCCCgcaggucacgcGGCgCGcGCUCaugUGCAGuGCg -3'
miRNA:   3'- -GGUCGGG-----------UCG-GUaCGAGa--ACGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 33586 0.67 0.867668
Target:  5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3'
miRNA:   3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 30674 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 115964 0.66 0.9095
Target:  5'- cCCcGCCCccGCCGUGCUgc-GCGGggUa -3'
miRNA:   3'- -GGuCGGGu-CGGUACGAgaaCGUCuuG- -5'
6504 3' -54.8 NC_001847.1 + 7086 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6504 3' -54.8 NC_001847.1 + 49120 0.67 0.843645
Target:  5'- aCCAGCgCAGCaGUGCcgucgUCUUGCccGAGCc -3'
miRNA:   3'- -GGUCGgGUCGgUACG-----AGAACGu-CUUG- -5'
6504 3' -54.8 NC_001847.1 + 26535 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6504 3' -54.8 NC_001847.1 + 35550 0.66 0.915013
Target:  5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3'
miRNA:   3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 62565 0.67 0.851867
Target:  5'- -uGGCCCAGCCcgcGCaUCgcgUGCAGGu- -3'
miRNA:   3'- ggUCGGGUCGGua-CG-AGa--ACGUCUug -5'
6504 3' -54.8 NC_001847.1 + 65448 0.66 0.915613
Target:  5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3'
miRNA:   3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5'
6504 3' -54.8 NC_001847.1 + 65667 0.67 0.874487
Target:  5'- gCCAGCCCGGCCA-------GCAGGAg -3'
miRNA:   3'- -GGUCGGGUCGGUacgagaaCGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 41094 0.67 0.851867
Target:  5'- gCCGGCCCAGCUgcgccugcacGUGgUUggcGCGGAAg -3'
miRNA:   3'- -GGUCGGGUCGG----------UACgAGaa-CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 120773 0.66 0.882569
Target:  5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3'
miRNA:   3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 104324 0.66 0.903136
Target:  5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 1351 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6504 3' -54.8 NC_001847.1 + 85257 0.68 0.799634
Target:  5'- cCCAGCacgUAGCCGUGCagcagCUcGCAGAguGCg -3'
miRNA:   3'- -GGUCGg--GUCGGUACGa----GAaCGUCU--UG- -5'
6504 3' -54.8 NC_001847.1 + 91000 0.68 0.826596
Target:  5'- uCCAGCgagacgagagCCAcGCCGUGCcg--GCGGAGCa -3'
miRNA:   3'- -GGUCG----------GGU-CGGUACGagaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 60482 0.67 0.843645
Target:  5'- gCGGCUCGGCCG-GCUCcaggcGCAGcAGCu -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa---CGUC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.