miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 14811 0.68 0.65864
Target:  5'- -cGCCCggCCgGGAGCUGGuguUCCAGGAa -3'
miRNA:   3'- gcUGGG--GGgUCUCGACUuu-GGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 34308 0.69 0.638347
Target:  5'- cCGGCCCUggCCGGAGCc---GCCCGGGc -3'
miRNA:   3'- -GCUGGGG--GGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 124764 0.69 0.60789
Target:  5'- gCGGCCCCgCCGcGAGCgGcGACCCgagcaGGGAg -3'
miRNA:   3'- -GCUGGGG-GGU-CUCGaCuUUGGG-----UCCU- -5'
6504 5' -58.3 NC_001847.1 + 257 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 131733 0.69 0.587662
Target:  5'- uGGCCCCCCGG-GCUGcucuCCCGcugcuugcGGAg -3'
miRNA:   3'- gCUGGGGGGUCuCGACuuu-GGGU--------CCU- -5'
6504 5' -58.3 NC_001847.1 + 90851 0.69 0.587662
Target:  5'- gCGGCgCCCCGGGGCcGggGCuggugucgaggCCGGGGc -3'
miRNA:   3'- -GCUGgGGGGUCUCGaCuuUG-----------GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 28336 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 33710 0.67 0.738287
Target:  5'- cCGcGCCCCCCAGcuCUcGGAGCCgcggCGGGAg -3'
miRNA:   3'- -GC-UGGGGGGUCucGA-CUUUGG----GUCCU- -5'
6504 5' -58.3 NC_001847.1 + 3115 0.67 0.746968
Target:  5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3'
miRNA:   3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 30014 0.66 0.812106
Target:  5'- -uGCCCgCCCGcGuGCUGggGCCCAu-- -3'
miRNA:   3'- gcUGGG-GGGU-CuCGACuuUGGGUccu -5'
6504 5' -58.3 NC_001847.1 + 17887 0.66 0.812106
Target:  5'- gCGGCCCCgCAGAGCaGGA--UUAGGGc -3'
miRNA:   3'- -GCUGGGGgGUCUCGaCUUugGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 115529 0.66 0.794447
Target:  5'- cCGGCgCCCCGggcccGAGCUcGGGCCCGGa- -3'
miRNA:   3'- -GCUGgGGGGU-----CUCGAcUUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 20135 0.66 0.794447
Target:  5'- cCGACaCUCCCuGAGCUGguGgCCGGuGGu -3'
miRNA:   3'- -GCUG-GGGGGuCUCGACuuUgGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 25794 0.66 0.785397
Target:  5'- -cGCCCUcgcaCCGGcGGCUGugGCCCAGGc -3'
miRNA:   3'- gcUGGGG----GGUC-UCGACuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 30991 0.66 0.784485
Target:  5'- uGGCCgCgCAGGgcgcggcGCUGggGCUCGGGGa -3'
miRNA:   3'- gCUGGgGgGUCU-------CGACuuUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 28203 0.66 0.776211
Target:  5'- gGGCCCgaggacgaUgGGGGC-GAGGCCCGGGAg -3'
miRNA:   3'- gCUGGGg-------GgUCUCGaCUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 11268 0.66 0.776211
Target:  5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3'
miRNA:   3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 16453 0.67 0.757468
Target:  5'- -uACCCagCCGGGGCUGcgGCCCGGc- -3'
miRNA:   3'- gcUGGGg-GGUCUCGACuuUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 32310 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 749 0.67 0.747928
Target:  5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3'
miRNA:   3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.