miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 78951 0.66 0.812106
Target:  5'- uGugCCCCgCAG-GCUGGcgcucgcgcAGCCuCGGGGg -3'
miRNA:   3'- gCugGGGG-GUCuCGACU---------UUGG-GUCCU- -5'
6504 5' -58.3 NC_001847.1 + 79585 0.67 0.708857
Target:  5'- gCGGCCUCUUcGGGCgGggGCgCCGGGGg -3'
miRNA:   3'- -GCUGGGGGGuCUCGaCuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 80233 0.69 0.587662
Target:  5'- aGACCCCCgC-GAGCU----CCCGGGAa -3'
miRNA:   3'- gCUGGGGG-GuCUCGAcuuuGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 85043 0.67 0.708857
Target:  5'- cCGG-CCCCCAGcAGCUGGccgAGCaUCAGGGg -3'
miRNA:   3'- -GCUgGGGGGUC-UCGACU---UUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 90851 0.69 0.587662
Target:  5'- gCGGCgCCCCGGGGCcGggGCuggugucgaggCCGGGGc -3'
miRNA:   3'- -GCUGgGGGGUCUCGaCuuUG-----------GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 93529 0.66 0.785397
Target:  5'- cCGGCggCCCCGGAGC----GCCCGGGu -3'
miRNA:   3'- -GCUGg-GGGGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 100633 0.66 0.812106
Target:  5'- gCGACCgCCU--GGCUGcgGCgCCAGGGc -3'
miRNA:   3'- -GCUGGgGGGucUCGACuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 100743 0.67 0.718743
Target:  5'- cCGAgCUCUCGGGGCcGGggUCCAGGu -3'
miRNA:   3'- -GCUgGGGGGUCUCGaCUuuGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 103028 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 103070 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 103562 0.67 0.747928
Target:  5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3'
miRNA:   3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5'
6504 5' -58.3 NC_001847.1 + 105928 0.67 0.746968
Target:  5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3'
miRNA:   3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 106812 0.7 0.567561
Target:  5'- gCGGCCCCgCGGGGCgccGGGCCCGGc- -3'
miRNA:   3'- -GCUGGGGgGUCUCGac-UUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 107510 0.68 0.678848
Target:  5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3'
miRNA:   3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 107724 0.67 0.708857
Target:  5'- gGGCaCCCCGGGGCUacAACCCuuGGGc -3'
miRNA:   3'- gCUGgGGGGUCUCGAcuUUGGGu-CCU- -5'
6504 5' -58.3 NC_001847.1 + 108059 0.66 0.812106
Target:  5'- gCGACgCCUCCAGcgugGGCgcgGugccGCCCGGGGg -3'
miRNA:   3'- -GCUG-GGGGGUC----UCGa--Cuu--UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 112281 1.08 0.001725
Target:  5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3'
miRNA:   3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 114081 0.66 0.776211
Target:  5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3'
miRNA:   3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 115529 0.66 0.794447
Target:  5'- cCGGCgCCCCGggcccGAGCUcGGGCCCGGa- -3'
miRNA:   3'- -GCUGgGGGGU-----CUCGAcUUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 123863 0.71 0.498914
Target:  5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3'
miRNA:   3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.