miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 29923 0.7 0.567561
Target:  5'- gGGCCCCUCGGGGgagGAGACUCuGGGc -3'
miRNA:   3'- gCUGGGGGGUCUCga-CUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 30014 0.66 0.812106
Target:  5'- -uGCCCgCCCGcGuGCUGggGCCCAu-- -3'
miRNA:   3'- gcUGGG-GGGU-CuCGACuuUGGGUccu -5'
6504 5' -58.3 NC_001847.1 + 30991 0.66 0.784485
Target:  5'- uGGCCgCgCAGGgcgcggcGCUGggGCUCGGGGa -3'
miRNA:   3'- gCUGGgGgGUCU-------CGACuuUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 31975 0.77 0.231161
Target:  5'- gGGCgggCCCCGGGGCgcGAAGCCCGGGAg -3'
miRNA:   3'- gCUGg--GGGGUCUCGa-CUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 32081 0.7 0.536775
Target:  5'- gGGCCCCUgggcgccgggcguCGGGGCgcGAGGCCCGGGc -3'
miRNA:   3'- gCUGGGGG-------------GUCUCGa-CUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 32185 0.76 0.266729
Target:  5'- cCGGCCCCCCggccGGGGCccGAGGCCCGcGGGc -3'
miRNA:   3'- -GCUGGGGGG----UCUCGa-CUUUGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 32240 0.71 0.498914
Target:  5'- gGACCCaggggcggagCCCAGAGCg--GGCCCGGGc -3'
miRNA:   3'- gCUGGG----------GGGUCUCGacuUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 32310 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 32778 0.67 0.718743
Target:  5'- aGAUCCCUguGGGggGAGGgCCGGGGg -3'
miRNA:   3'- gCUGGGGGguCUCgaCUUUgGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 33671 0.69 0.628189
Target:  5'- gCGGCCCgCgCGGGGCUaGAGGCgCAGGc -3'
miRNA:   3'- -GCUGGGgG-GUCUCGA-CUUUGgGUCCu -5'
6504 5' -58.3 NC_001847.1 + 33710 0.67 0.738287
Target:  5'- cCGcGCCCCCCAGcuCUcGGAGCCgcggCGGGAg -3'
miRNA:   3'- -GC-UGGGGGGUCucGA-CUUUGG----GUCCU- -5'
6504 5' -58.3 NC_001847.1 + 34308 0.69 0.638347
Target:  5'- cCGGCCCUggCCGGAGCc---GCCCGGGc -3'
miRNA:   3'- -GCUGGGG--GGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 40803 0.66 0.776211
Target:  5'- gCGuCCUCCUcguauucgggggGGAGCUGcaccACCCGGGGg -3'
miRNA:   3'- -GCuGGGGGG------------UCUCGACuu--UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 50334 0.7 0.557575
Target:  5'- aGGCCCCCCGG-GCUGccg-CUAGGGu -3'
miRNA:   3'- gCUGGGGGGUCuCGACuuugGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 56050 0.69 0.638347
Target:  5'- aCGACCCCUgGGAggcgccGCUGAAGCCUg--- -3'
miRNA:   3'- -GCUGGGGGgUCU------CGACUUUGGGuccu -5'
6504 5' -58.3 NC_001847.1 + 56902 0.72 0.434211
Target:  5'- gCGACgucggCCUCCAGGGC-GAAcccGCCCGGGAa -3'
miRNA:   3'- -GCUG-----GGGGGUCUCGaCUU---UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 65586 0.71 0.498914
Target:  5'- uGGCCCCCCAGGcacacGCgcauccacGCCCGGGGc -3'
miRNA:   3'- gCUGGGGGGUCU-----CGacuu----UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 72364 0.67 0.708857
Target:  5'- -cGCCCCCCcGGGCccAGACCCGGuGGu -3'
miRNA:   3'- gcUGGGGGGuCUCGacUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 72675 0.75 0.320862
Target:  5'- cCGGCgaCCCCGGcccuGCUGAGGCCgGGGAg -3'
miRNA:   3'- -GCUGg-GGGGUCu---CGACUUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 75105 0.66 0.794447
Target:  5'- gCGGCgCCCCGGcGCUugcccGAGaagGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGGUCuCGA-----CUU---UGGGUCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.