Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 215 | 0.7 | 0.567561 |
Target: 5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3' miRNA: 3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 257 | 0.69 | 0.597764 |
Target: 5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3' miRNA: 3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 749 | 0.67 | 0.747928 |
Target: 5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3' miRNA: 3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 3115 | 0.67 | 0.746968 |
Target: 5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3' miRNA: 3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 3999 | 0.7 | 0.567561 |
Target: 5'- gCGGCCCCgCGGGGCgccGGGCCCGGc- -3' miRNA: 3'- -GCUGGGGgGUCUCGac-UUUGGGUCcu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 4697 | 0.68 | 0.678848 |
Target: 5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3' miRNA: 3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 9468 | 1.08 | 0.001725 |
Target: 5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3' miRNA: 3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 11268 | 0.66 | 0.776211 |
Target: 5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3' miRNA: 3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 14811 | 0.68 | 0.65864 |
Target: 5'- -cGCCCggCCgGGAGCUGGuguUCCAGGAa -3' miRNA: 3'- gcUGGG--GGgUCUCGACUuu-GGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 16453 | 0.67 | 0.757468 |
Target: 5'- -uACCCagCCGGGGCUGcgGCCCGGc- -3' miRNA: 3'- gcUGGGg-GGUCUCGACuuUGGGUCcu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 17887 | 0.66 | 0.812106 |
Target: 5'- gCGGCCCCgCAGAGCaGGA--UUAGGGc -3' miRNA: 3'- -GCUGGGGgGUCUCGaCUUugGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 18115 | 0.66 | 0.766898 |
Target: 5'- gCGAgCCCCCGccGGGCagacagGAGcGCCCAGGc -3' miRNA: 3'- -GCUgGGGGGU--CUCGa-----CUU-UGGGUCCu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 19605 | 0.69 | 0.618034 |
Target: 5'- cCGAUCCgggCCC-GAGCUcGGGCCCGGGGc -3' miRNA: 3'- -GCUGGG---GGGuCUCGAcUUUGGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 20135 | 0.66 | 0.794447 |
Target: 5'- cCGACaCUCCCuGAGCUGguGgCCGGuGGu -3' miRNA: 3'- -GCUG-GGGGGuCUCGACuuUgGGUC-CU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 21050 | 0.71 | 0.498914 |
Target: 5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3' miRNA: 3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 21667 | 0.71 | 0.508514 |
Target: 5'- gCGAgCCCCCCGGcgacggguauGGCgaGGAGCCCGGcGAg -3' miRNA: 3'- -GCU-GGGGGGUC----------UCGa-CUUUGGGUC-CU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 22582 | 0.67 | 0.728556 |
Target: 5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3' miRNA: 3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 25794 | 0.66 | 0.785397 |
Target: 5'- -cGCCCUcgcaCCGGcGGCUGugGCCCAGGc -3' miRNA: 3'- gcUGGGG----GGUC-UCGACuuUGGGUCCu -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 28203 | 0.66 | 0.776211 |
Target: 5'- gGGCCCgaggacgaUgGGGGC-GAGGCCCGGGAg -3' miRNA: 3'- gCUGGGg-------GgUCUCGaCUUUGGGUCCU- -5' |
|||||||
6504 | 5' | -58.3 | NC_001847.1 | + | 28336 | 0.67 | 0.728556 |
Target: 5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3' miRNA: 3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home