miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 112281 1.08 0.001725
Target:  5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3'
miRNA:   3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 9468 1.08 0.001725
Target:  5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3'
miRNA:   3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 134788 0.77 0.231161
Target:  5'- gGGCgggCCCCGGGGCgcGAAGCCCGGGAg -3'
miRNA:   3'- gCUGg--GGGGUCUCGa-CUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 31975 0.77 0.231161
Target:  5'- gGGCgggCCCCGGGGCgcGAAGCCCGGGAg -3'
miRNA:   3'- gCUGg--GGGGUCUCGa-CUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 134998 0.76 0.266729
Target:  5'- cCGGCCCCCCggccGGGGCccGAGGCCCGcGGGc -3'
miRNA:   3'- -GCUGGGGGG----UCUCGa-CUUUGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 32185 0.76 0.266729
Target:  5'- cCGGCCCCCCggccGGGGCccGAGGCCCGcGGGc -3'
miRNA:   3'- -GCUGGGGGG----UCUCGa-CUUUGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 72675 0.75 0.320862
Target:  5'- cCGGCgaCCCCGGcccuGCUGAGGCCgGGGAg -3'
miRNA:   3'- -GCUGg-GGGGUCu---CGACUUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 56902 0.72 0.434211
Target:  5'- gCGACgucggCCUCCAGGGC-GAAcccGCCCGGGAa -3'
miRNA:   3'- -GCUG-----GGGGGUCUCGaCUU---UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 32240 0.71 0.498914
Target:  5'- gGACCCaggggcggagCCCAGAGCg--GGCCCGGGc -3'
miRNA:   3'- gCUGGG----------GGGUCUCGacuUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 65586 0.71 0.498914
Target:  5'- uGGCCCCCCAGGcacacGCgcauccacGCCCGGGGc -3'
miRNA:   3'- gCUGGGGGGUCU-----CGacuu----UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 21050 0.71 0.498914
Target:  5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3'
miRNA:   3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 123863 0.71 0.498914
Target:  5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3'
miRNA:   3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 135053 0.71 0.498914
Target:  5'- gGACCCaggggcggagCCCAGAGCg--GGCCCGGGc -3'
miRNA:   3'- gCUGGG----------GGGUCUCGacuUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 124480 0.71 0.508514
Target:  5'- gCGAgCCCCCCGGcgacggguauGGCgaGGAGCCCGGcGAg -3'
miRNA:   3'- -GCU-GGGGGGUC----------UCGa-CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 21667 0.71 0.508514
Target:  5'- gCGAgCCCCCCGGcgacggguauGGCgaGGAGCCCGGcGAg -3'
miRNA:   3'- -GCU-GGGGGGUC----------UCGa-CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 134894 0.7 0.536775
Target:  5'- gGGCCCCUgggcgccgggcguCGGGGCgcGAGGCCCGGGc -3'
miRNA:   3'- gCUGGGGG-------------GUCUCGa-CUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 32081 0.7 0.536775
Target:  5'- gGGCCCCUgggcgccgggcguCGGGGCgcGAGGCCCGGGc -3'
miRNA:   3'- gCUGGGGG-------------GUCUCGa-CUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 50334 0.7 0.557575
Target:  5'- aGGCCCCCCGG-GCUGccg-CUAGGGu -3'
miRNA:   3'- gCUGGGGGGUCuCGACuuugGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 29923 0.7 0.567561
Target:  5'- gGGCCCCUCGGGGgagGAGACUCuGGGc -3'
miRNA:   3'- gCUGGGGGGUCUCga-CUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 215 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.