miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 105928 0.67 0.746968
Target:  5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3'
miRNA:   3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 33671 0.69 0.628189
Target:  5'- gCGGCCCgCgCGGGGCUaGAGGCgCAGGc -3'
miRNA:   3'- -GCUGGGgG-GUCUCGA-CUUUGgGUCCu -5'
6504 5' -58.3 NC_001847.1 + 56050 0.69 0.638347
Target:  5'- aCGACCCCUgGGAggcgccGCUGAAGCCUg--- -3'
miRNA:   3'- -GCUGGGGGgUCU------CGACUUUGGGuccu -5'
6504 5' -58.3 NC_001847.1 + 132735 0.69 0.638347
Target:  5'- gGGCCCCUCGGGGgaGGacGACUCuGGGc -3'
miRNA:   3'- gCUGGGGGGUCUCgaCU--UUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 107510 0.68 0.678848
Target:  5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3'
miRNA:   3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 85043 0.67 0.708857
Target:  5'- cCGG-CCCCCAGcAGCUGGccgAGCaUCAGGGg -3'
miRNA:   3'- -GCUgGGGGGUC-UCGACU---UUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 100743 0.67 0.718743
Target:  5'- cCGAgCUCUCGGGGCcGGggUCCAGGu -3'
miRNA:   3'- -GCUgGGGGGUCUCGaCUuuGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 125395 0.67 0.728556
Target:  5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3'
miRNA:   3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 131149 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 19605 0.69 0.618034
Target:  5'- cCGAUCCgggCCC-GAGCUcGGGCCCGGGGc -3'
miRNA:   3'- -GCUGGG---GGGuCUCGAcUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 103070 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 80233 0.69 0.587662
Target:  5'- aGACCCCCgC-GAGCU----CCCGGGAa -3'
miRNA:   3'- gCUGGGGG-GuCUCGAcuuuGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 134788 0.77 0.231161
Target:  5'- gGGCgggCCCCGGGGCgcGAAGCCCGGGAg -3'
miRNA:   3'- gCUGg--GGGGUCUCGa-CUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 134998 0.76 0.266729
Target:  5'- cCGGCCCCCCggccGGGGCccGAGGCCCGcGGGc -3'
miRNA:   3'- -GCUGGGGGG----UCUCGa-CUUUGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 135053 0.71 0.498914
Target:  5'- gGACCCaggggcggagCCCAGAGCg--GGCCCGGGc -3'
miRNA:   3'- gCUGGG----------GGGUCUCGacuUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 123863 0.71 0.498914
Target:  5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3'
miRNA:   3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 124480 0.71 0.508514
Target:  5'- gCGAgCCCCCCGGcgacggguauGGCgaGGAGCCCGGcGAg -3'
miRNA:   3'- -GCU-GGGGGGUC----------UCGa-CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 134894 0.7 0.536775
Target:  5'- gGGCCCCUgggcgccgggcguCGGGGCgcGAGGCCCGGGc -3'
miRNA:   3'- gCUGGGGG-------------GUCUCGa-CUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 103028 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 106812 0.7 0.567561
Target:  5'- gCGGCCCCgCGGGGCgccGGGCCCGGc- -3'
miRNA:   3'- -GCUGGGGgGUCUCGac-UUUGGGUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.