miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 108059 0.66 0.812106
Target:  5'- gCGACgCCUCCAGcgugGGCgcgGugccGCCCGGGGg -3'
miRNA:   3'- -GCUG-GGGGGUC----UCGa--Cuu--UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 72364 0.67 0.708857
Target:  5'- -cGCCCCCCcGGGCccAGACCCGGuGGu -3'
miRNA:   3'- gcUGGGGGGuCUCGacUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 79585 0.67 0.708857
Target:  5'- gCGGCCUCUUcGGGCgGggGCgCCGGGGg -3'
miRNA:   3'- -GCUGGGGGGuCUCGaCuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 9468 1.08 0.001725
Target:  5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3'
miRNA:   3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 20135 0.66 0.794447
Target:  5'- cCGACaCUCCCuGAGCUGguGgCCGGuGGu -3'
miRNA:   3'- -GCUG-GGGGGuCUCGACuuUgGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 25794 0.66 0.785397
Target:  5'- -cGCCCUcgcaCCGGcGGCUGugGCCCAGGc -3'
miRNA:   3'- gcUGGGG----GGUC-UCGACuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 28203 0.66 0.776211
Target:  5'- gGGCCCgaggacgaUgGGGGC-GAGGCCCGGGAg -3'
miRNA:   3'- gCUGGGg-------GgUCUCGaCUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 11268 0.66 0.776211
Target:  5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3'
miRNA:   3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 749 0.67 0.747928
Target:  5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3'
miRNA:   3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5'
6504 5' -58.3 NC_001847.1 + 32778 0.67 0.718743
Target:  5'- aGAUCCCUguGGGggGAGGgCCGGGGg -3'
miRNA:   3'- gCUGGGGGguCUCgaCUUUgGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 33710 0.67 0.738287
Target:  5'- cCGcGCCCCCCAGcuCUcGGAGCCgcggCGGGAg -3'
miRNA:   3'- -GC-UGGGGGGUCucGA-CUUUGG----GUCCU- -5'
6504 5' -58.3 NC_001847.1 + 32310 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 30014 0.66 0.812106
Target:  5'- -uGCCCgCCCGcGuGCUGggGCCCAu-- -3'
miRNA:   3'- gcUGGG-GGGU-CuCGACuuUGGGUccu -5'
6504 5' -58.3 NC_001847.1 + 28336 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 17887 0.66 0.812106
Target:  5'- gCGGCCCCgCAGAGCaGGA--UUAGGGc -3'
miRNA:   3'- -GCUGGGGgGUCUCGaCUUugGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 16453 0.67 0.757468
Target:  5'- -uACCCagCCGGGGCUGcgGCCCGGc- -3'
miRNA:   3'- gcUGGGg-GGUCUCGACuuUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 22582 0.67 0.728556
Target:  5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3'
miRNA:   3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 107724 0.67 0.708857
Target:  5'- gGGCaCCCCGGGGCUacAACCCuuGGGc -3'
miRNA:   3'- gCUGgGGGGUCUCGAcuUUGGGu-CCU- -5'
6504 5' -58.3 NC_001847.1 + 115529 0.66 0.794447
Target:  5'- cCGGCgCCCCGggcccGAGCUcGGGCCCGGa- -3'
miRNA:   3'- -GCUGgGGGGU-----CUCGAcUUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 30991 0.66 0.784485
Target:  5'- uGGCCgCgCAGGgcgcggcGCUGggGCUCGGGGa -3'
miRNA:   3'- gCUGGgGgGUCU-------CGACuuUGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.