miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 103028 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 3999 0.7 0.567561
Target:  5'- gCGGCCCCgCGGGGCgccGGGCCCGGc- -3'
miRNA:   3'- -GCUGGGGgGUCUCGac-UUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 215 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 90851 0.69 0.587662
Target:  5'- gCGGCgCCCCGGGGCcGggGCuggugucgaggCCGGGGc -3'
miRNA:   3'- -GCUGgGGGGUCUCGaCuuUG-----------GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 80233 0.69 0.587662
Target:  5'- aGACCCCCgC-GAGCU----CCCGGGAa -3'
miRNA:   3'- gCUGGGGG-GuCUCGAcuuuGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 131733 0.69 0.587662
Target:  5'- uGGCCCCCCGG-GCUGcucuCCCGcugcuugcGGAg -3'
miRNA:   3'- gCUGGGGGGUCuCGACuuu-GGGU--------CCU- -5'
6504 5' -58.3 NC_001847.1 + 103070 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 257 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 124764 0.69 0.60789
Target:  5'- gCGGCCCCgCCGcGAGCgGcGACCCgagcaGGGAg -3'
miRNA:   3'- -GCUGGGG-GGU-CUCGaCuUUGGG-----UCCU- -5'
6504 5' -58.3 NC_001847.1 + 19605 0.69 0.618034
Target:  5'- cCGAUCCgggCCC-GAGCUcGGGCCCGGGGc -3'
miRNA:   3'- -GCUGGG---GGGuCUCGAcUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 33671 0.69 0.628189
Target:  5'- gCGGCCCgCgCGGGGCUaGAGGCgCAGGc -3'
miRNA:   3'- -GCUGGGgG-GUCUCGA-CUUUGgGUCCu -5'
6504 5' -58.3 NC_001847.1 + 34308 0.69 0.638347
Target:  5'- cCGGCCCUggCCGGAGCc---GCCCGGGc -3'
miRNA:   3'- -GCUGGGG--GGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 132735 0.69 0.638347
Target:  5'- gGGCCCCUCGGGGgaGGacGACUCuGGGc -3'
miRNA:   3'- gCUGGGGGGUCUCgaCU--UUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 56050 0.69 0.638347
Target:  5'- aCGACCCCUgGGAggcgccGCUGAAGCCUg--- -3'
miRNA:   3'- -GCUGGGGGgUCU------CGACUUUGGGuccu -5'
6504 5' -58.3 NC_001847.1 + 14811 0.68 0.65864
Target:  5'- -cGCCCggCCgGGAGCUGGuguUCCAGGAa -3'
miRNA:   3'- gcUGGG--GGgUCUCGACUuu-GGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 4697 0.68 0.678848
Target:  5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3'
miRNA:   3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 107510 0.68 0.678848
Target:  5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3'
miRNA:   3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 85043 0.67 0.708857
Target:  5'- cCGG-CCCCCAGcAGCUGGccgAGCaUCAGGGg -3'
miRNA:   3'- -GCUgGGGGGUC-UCGACU---UUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 107724 0.67 0.708857
Target:  5'- gGGCaCCCCGGGGCUacAACCCuuGGGc -3'
miRNA:   3'- gCUGgGGGGUCUCGAcuUUGGGu-CCU- -5'
6504 5' -58.3 NC_001847.1 + 72364 0.67 0.708857
Target:  5'- -cGCCCCCCcGGGCccAGACCCGGuGGu -3'
miRNA:   3'- gcUGGGGGGuCUCGacUUUGGGUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.