miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 135123 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 135053 0.71 0.498914
Target:  5'- gGACCCaggggcggagCCCAGAGCg--GGCCCGGGc -3'
miRNA:   3'- gCUGGG----------GGGUCUCGacuUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 134998 0.76 0.266729
Target:  5'- cCGGCCCCCCggccGGGGCccGAGGCCCGcGGGc -3'
miRNA:   3'- -GCUGGGGGG----UCUCGa-CUUUGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 134894 0.7 0.536775
Target:  5'- gGGCCCCUgggcgccgggcguCGGGGCgcGAGGCCCGGGc -3'
miRNA:   3'- gCUGGGGG-------------GUCUCGa-CUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 134788 0.77 0.231161
Target:  5'- gGGCgggCCCCGGGGCgcGAAGCCCGGGAg -3'
miRNA:   3'- gCUGg--GGGGUCUCGa-CUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 133804 0.66 0.784485
Target:  5'- uGGCCgCgCAGGgcgcggcGCUGggGCUCGGGGa -3'
miRNA:   3'- gCUGGgGgGUCU-------CGACuuUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 132827 0.66 0.812106
Target:  5'- -uGCCCgCCCGcGuGCUGggGCCCAu-- -3'
miRNA:   3'- gcUGGG-GGGU-CuCGACuuUGGGUccu -5'
6504 5' -58.3 NC_001847.1 + 132735 0.69 0.638347
Target:  5'- gGGCCCCUCGGGGgaGGacGACUCuGGGc -3'
miRNA:   3'- gCUGGGGGGUCUCgaCU--UUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 131733 0.69 0.587662
Target:  5'- uGGCCCCCCGG-GCUGcucuCCCGcugcuugcGGAg -3'
miRNA:   3'- gCUGGGGGGUCuCGACuuu-GGGU--------CCU- -5'
6504 5' -58.3 NC_001847.1 + 131149 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 131016 0.66 0.776211
Target:  5'- gGGCCCgaggacgaUgGGGGC-GAGGCCCGGGAg -3'
miRNA:   3'- gCUGGGg-------GgUCUCGaCUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 128607 0.66 0.785397
Target:  5'- -cGCCCUcgcaCCGGcGGCUGugGCCCAGGc -3'
miRNA:   3'- gcUGGGG----GGUC-UCGACuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 125395 0.67 0.728556
Target:  5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3'
miRNA:   3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 124764 0.69 0.60789
Target:  5'- gCGGCCCCgCCGcGAGCgGcGACCCgagcaGGGAg -3'
miRNA:   3'- -GCUGGGG-GGU-CUCGaCuUUGGG-----UCCU- -5'
6504 5' -58.3 NC_001847.1 + 124480 0.71 0.508514
Target:  5'- gCGAgCCCCCCGGcgacggguauGGCgaGGAGCCCGGcGAg -3'
miRNA:   3'- -GCU-GGGGGGUC----------UCGa-CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 123863 0.71 0.498914
Target:  5'- cCGAgaCCCCCGGccCUGAGGCCCuGGGg -3'
miRNA:   3'- -GCUg-GGGGGUCucGACUUUGGGuCCU- -5'
6504 5' -58.3 NC_001847.1 + 115529 0.66 0.794447
Target:  5'- cCGGCgCCCCGggcccGAGCUcGGGCCCGGa- -3'
miRNA:   3'- -GCUGgGGGGU-----CUCGAcUUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 114081 0.66 0.776211
Target:  5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3'
miRNA:   3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 112281 1.08 0.001725
Target:  5'- gCGACCCCCCAGAGCUGAAACCCAGGAc -3'
miRNA:   3'- -GCUGGGGGGUCUCGACUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 108059 0.66 0.812106
Target:  5'- gCGACgCCUCCAGcgugGGCgcgGugccGCCCGGGGg -3'
miRNA:   3'- -GCUG-GGGGGUC----UCGa--Cuu--UGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.