miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 107724 0.67 0.708857
Target:  5'- gGGCaCCCCGGGGCUacAACCCuuGGGc -3'
miRNA:   3'- gCUGgGGGGUCUCGAcuUUGGGu-CCU- -5'
6504 5' -58.3 NC_001847.1 + 107510 0.68 0.678848
Target:  5'- cCGAgCCCCCCGucGGGCcGAggUCCGcGGAc -3'
miRNA:   3'- -GCU-GGGGGGU--CUCGaCUuuGGGU-CCU- -5'
6504 5' -58.3 NC_001847.1 + 106812 0.7 0.567561
Target:  5'- gCGGCCCCgCGGGGCgccGGGCCCGGc- -3'
miRNA:   3'- -GCUGGGGgGUCUCGac-UUUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 105928 0.67 0.746968
Target:  5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3'
miRNA:   3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 103562 0.67 0.747928
Target:  5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3'
miRNA:   3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5'
6504 5' -58.3 NC_001847.1 + 103070 0.69 0.597764
Target:  5'- cCGGCgCCCaGGGGCccGAGCCCGGGGg -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 103028 0.7 0.567561
Target:  5'- cCGGCgCCCgGGGGCccGAGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGgUCUCGacUUUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 100743 0.67 0.718743
Target:  5'- cCGAgCUCUCGGGGCcGGggUCCAGGu -3'
miRNA:   3'- -GCUgGGGGGUCUCGaCUuuGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 100633 0.66 0.812106
Target:  5'- gCGACCgCCU--GGCUGcgGCgCCAGGGc -3'
miRNA:   3'- -GCUGGgGGGucUCGACuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 93529 0.66 0.785397
Target:  5'- cCGGCggCCCCGGAGC----GCCCGGGu -3'
miRNA:   3'- -GCUGg-GGGGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 90851 0.69 0.587662
Target:  5'- gCGGCgCCCCGGGGCcGggGCuggugucgaggCCGGGGc -3'
miRNA:   3'- -GCUGgGGGGUCUCGaCuuUG-----------GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 85043 0.67 0.708857
Target:  5'- cCGG-CCCCCAGcAGCUGGccgAGCaUCAGGGg -3'
miRNA:   3'- -GCUgGGGGGUC-UCGACU---UUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 80233 0.69 0.587662
Target:  5'- aGACCCCCgC-GAGCU----CCCGGGAa -3'
miRNA:   3'- gCUGGGGG-GuCUCGAcuuuGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 79585 0.67 0.708857
Target:  5'- gCGGCCUCUUcGGGCgGggGCgCCGGGGg -3'
miRNA:   3'- -GCUGGGGGGuCUCGaCuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 78951 0.66 0.812106
Target:  5'- uGugCCCCgCAG-GCUGGcgcucgcgcAGCCuCGGGGg -3'
miRNA:   3'- gCugGGGG-GUCuCGACU---------UUGG-GUCCU- -5'
6504 5' -58.3 NC_001847.1 + 75105 0.66 0.794447
Target:  5'- gCGGCgCCCCGGcGCUugcccGAGaagGCCCGGGc -3'
miRNA:   3'- -GCUGgGGGGUCuCGA-----CUU---UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 72675 0.75 0.320862
Target:  5'- cCGGCgaCCCCGGcccuGCUGAGGCCgGGGAg -3'
miRNA:   3'- -GCUGg-GGGGUCu---CGACUUUGGgUCCU- -5'
6504 5' -58.3 NC_001847.1 + 72364 0.67 0.708857
Target:  5'- -cGCCCCCCcGGGCccAGACCCGGuGGu -3'
miRNA:   3'- gcUGGGGGGuCUCGacUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 65586 0.71 0.498914
Target:  5'- uGGCCCCCCAGGcacacGCgcauccacGCCCGGGGc -3'
miRNA:   3'- gCUGGGGGGUCU-----CGacuu----UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 56902 0.72 0.434211
Target:  5'- gCGACgucggCCUCCAGGGC-GAAcccGCCCGGGAa -3'
miRNA:   3'- -GCUG-----GGGGGUCUCGaCUU---UGGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.