miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 51965 0.65 0.567297
Target:  5'- -cCCCCCGCCgUCCGCCagcccguCGGGCgUUGGGa -3'
miRNA:   3'- guGGGGGUGG-GGGUGG-------GCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 4426 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6505 3' -63.8 NC_001847.1 + 107239 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6505 3' -63.8 NC_001847.1 + 999 0.66 0.558657
Target:  5'- gCACCUUCuGCCCCCACCagcuGCUagcaGAGg -3'
miRNA:   3'- -GUGGGGG-UGGGGGUGGgcu-CGAg---CUC- -5'
6505 3' -63.8 NC_001847.1 + 60133 0.66 0.558657
Target:  5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3'
miRNA:   3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 127024 0.66 0.558657
Target:  5'- cCGCCCCUgggGCCCCgCGCCUGcGCUgGc- -3'
miRNA:   3'- -GUGGGGG---UGGGG-GUGGGCuCGAgCuc -5'
6505 3' -63.8 NC_001847.1 + 92182 0.66 0.558657
Target:  5'- gGCCggcggCCCGCCCCC-CCCGcGCgCGGc -3'
miRNA:   3'- gUGG-----GGGUGGGGGuGGGCuCGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 34222 0.66 0.558657
Target:  5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3'
miRNA:   3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 38817 0.66 0.549101
Target:  5'- aGCCCgCCGCCCaCCGacaCCGAGCg---- -3'
miRNA:   3'- gUGGG-GGUGGG-GGUg--GGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 9589 0.66 0.549101
Target:  5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 908 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 125624 0.66 0.549101
Target:  5'- aCGCUagCgCGCCgCCCGCUCG-GCUCGGGu -3'
miRNA:   3'- -GUGG--GgGUGG-GGGUGGGCuCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 55884 0.66 0.549101
Target:  5'- uCGCCCgCGgCCCgACgCCGgcuagcAGCUCGGGg -3'
miRNA:   3'- -GUGGGgGUgGGGgUG-GGC------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 112402 0.66 0.549101
Target:  5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 30215 0.66 0.549101
Target:  5'- gCGCCgaagCCGCgCgCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGg---GGUGgGgGUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103721 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66687 0.66 0.549101
Target:  5'- aACCCUCGCCUCCACagCGGGCg---- -3'
miRNA:   3'- gUGGGGGUGGGGGUGg-GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 30971 0.66 0.549101
Target:  5'- uGCCCCCuaguaCCCCugUgGAGCagCGAa -3'
miRNA:   3'- gUGGGGGug---GGGGugGgCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 31976 0.66 0.539597
Target:  5'- gGCCCCguggaCGCCgCC-CUCGAGCcgCGAGg -3'
miRNA:   3'- gUGGGG-----GUGGgGGuGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 24457 0.66 0.539597
Target:  5'- cCGCCCUCACCCUCGCgCaCGcAGCgCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUG-G-GC-UCGaGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.