miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 111626 1.06 0.000846
Target:  5'- uCACCCCCACCCCCACCCGAGCUCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 8813 1.06 0.000846
Target:  5'- uCACCCCCACCCCCACCCGAGCUCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103016 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 203 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 23344 0.85 0.032437
Target:  5'- aGCCCCCACCCCCGucugcccgccCCCGGGCcCGAGa -3'
miRNA:   3'- gUGGGGGUGGGGGU----------GGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 126157 0.85 0.032437
Target:  5'- aGCCCCCACCCCCGucugcccgccCCCGGGCcCGAGa -3'
miRNA:   3'- gUGGGGGUGGGGGU----------GGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 19588 0.82 0.049168
Target:  5'- uCGCCCCCcUCCCCgccccgauccggGCCCGAGCUCGGGc -3'
miRNA:   3'- -GUGGGGGuGGGGG------------UGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 64449 0.81 0.057406
Target:  5'- gCGCCCCCGCCgCCGCCCGcGGCggcgCGGGg -3'
miRNA:   3'- -GUGGGGGUGGgGGUGGGC-UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 8961 0.81 0.060439
Target:  5'- aGCCCCCACCCUCAUCuCGGGC-CGGGg -3'
miRNA:   3'- gUGGGGGUGGGGGUGG-GCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 55552 0.81 0.060439
Target:  5'- aCGCCCCCggcGCCCCCGCCCGAagagGCcgCGAGc -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGCU----CGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 23722 0.79 0.076109
Target:  5'- -cCCCCCGCCCCCGgCCGAGCgccgccccuggCGGGg -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCUCGa----------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 90047 0.79 0.076109
Target:  5'- uGCCCCCACCCCCGuCCCGGcGCaccaCGAGc -3'
miRNA:   3'- gUGGGGGUGGGGGU-GGGCU-CGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 126535 0.79 0.076109
Target:  5'- -cCCCCCGCCCCCGgCCGAGCgccgccccuggCGGGg -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCUCGa----------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 80611 0.79 0.082149
Target:  5'- cCGCCCCCGCCCCCGCCgCGGuuGC-CGAu -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG-GCU--CGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 15633 0.78 0.090918
Target:  5'- gGCCgCCGCCCCUccggGCUCGGGCUCGGGc -3'
miRNA:   3'- gUGGgGGUGGGGG----UGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 32181 0.77 0.116876
Target:  5'- aACCCCgGCCCCCcgGCCgGGGCcCGAGg -3'
miRNA:   3'- gUGGGGgUGGGGG--UGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 134994 0.77 0.116876
Target:  5'- aACCCCgGCCCCCcgGCCgGGGCcCGAGg -3'
miRNA:   3'- gUGGGGgUGGGGG--UGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 50674 0.76 0.122839
Target:  5'- aCACCCCCGCCCCCcCCCccGCUCc-- -3'
miRNA:   3'- -GUGGGGGUGGGGGuGGGcuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 117261 0.76 0.122839
Target:  5'- cCGCCgCCCG-CCCCGCCCGAGgaCGGGc -3'
miRNA:   3'- -GUGG-GGGUgGGGGUGGGCUCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 134726 0.76 0.125925
Target:  5'- cCGCCCCCGCCCgC-CCCGGGCccUCGGu -3'
miRNA:   3'- -GUGGGGGUGGGgGuGGGCUCG--AGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.