Results 1 - 20 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6506 | 5' | -53.1 | NC_001847.1 | + | 59574 | 0.66 | 0.952187 |
Target: 5'- gCCGGCGGAagcucuGGCu-GGcguGCGCGUCc -3' miRNA: 3'- gGGCCGUUU------CCGuuCCauuCGCGUAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 104228 | 0.66 | 0.956251 |
Target: 5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3' miRNA: 3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 107693 | 0.66 | 0.956251 |
Target: 5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3' miRNA: 3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 115705 | 0.66 | 0.947877 |
Target: 5'- gCCCGGCAGcGGGCGcgcGGccuuuGGCGC-UCc -3' miRNA: 3'- -GGGCCGUU-UCCGUu--CCau---UCGCGuAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 10883 | 0.66 | 0.947877 |
Target: 5'- gCCCaGGCAGAccgccugcGGCAGcuGGUGgcGGCGCGg- -3' miRNA: 3'- -GGG-CCGUUU--------CCGUU--CCAU--UCGCGUag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 79304 | 0.66 | 0.952187 |
Target: 5'- gCCGGCu--GGCAGcu---GCGCGUCa -3' miRNA: 3'- gGGCCGuuuCCGUUccauuCGCGUAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 95300 | 0.66 | 0.952187 |
Target: 5'- aCCGGCGGcuGGCGcgcgccacgcAGG-AAGCGC-UCg -3' miRNA: 3'- gGGCCGUUu-CCGU----------UCCaUUCGCGuAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 32651 | 0.66 | 0.952187 |
Target: 5'- gCUGGa--GGGCGAGGUGgacGGCGCc-- -3' miRNA: 3'- gGGCCguuUCCGUUCCAU---UCGCGuag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 101161 | 0.66 | 0.947877 |
Target: 5'- gCCGGgGccGGGGCcGGGgucgGGGCGCgGUCu -3' miRNA: 3'- gGGCCgU--UUCCGuUCCa---UUCGCG-UAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 104289 | 0.66 | 0.947877 |
Target: 5'- gCCgCGGCAGAGccGCAGcGgcGGCGCcUCg -3' miRNA: 3'- -GG-GCCGUUUC--CGUUcCauUCGCGuAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 134769 | 0.66 | 0.947877 |
Target: 5'- gUCCGGCGcgcggcgcgcGGGGCGGGccccgGGGCGCGa- -3' miRNA: 3'- -GGGCCGU----------UUCCGUUCca---UUCGCGUag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 74378 | 0.66 | 0.952187 |
Target: 5'- gCgCGGUAGAGGCGcuGGGggaccGCGCGg- -3' miRNA: 3'- -GgGCCGUUUCCGU--UCCauu--CGCGUag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 98738 | 0.66 | 0.947877 |
Target: 5'- gCCGGgGccGGGGCcGGGgccGGgGCAUCg -3' miRNA: 3'- gGGCCgU--UUCCGuUCCau-UCgCGUAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 124909 | 0.66 | 0.952187 |
Target: 5'- gCCCGGCAGgcgcgccggGGGCGAcagcGGGCGCGc- -3' miRNA: 3'- -GGGCCGUU---------UCCGUUcca-UUCGCGUag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 130848 | 0.66 | 0.952187 |
Target: 5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3' miRNA: 3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 96829 | 0.66 | 0.947877 |
Target: 5'- -gCGGUAAuuGGgGGGGaaaGGGCGCGUCg -3' miRNA: 3'- ggGCCGUUu-CCgUUCCa--UUCGCGUAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 56894 | 0.66 | 0.952187 |
Target: 5'- gCCGGCGAcGGCGAcgccGGcGGGCGgGUg -3' miRNA: 3'- gGGCCGUUuCCGUU----CCaUUCGCgUAg -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 105855 | 0.66 | 0.955856 |
Target: 5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3' miRNA: 3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 6692 | 0.66 | 0.947432 |
Target: 5'- gCCGGCc-GGGCGcgcgcgcAGGgccGAGCGCAc- -3' miRNA: 3'- gGGCCGuuUCCGU-------UCCa--UUCGCGUag -5' |
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6506 | 5' | -53.1 | NC_001847.1 | + | 128087 | 0.66 | 0.947877 |
Target: 5'- gCCCGGUAAGGggguuagcaGCGGGGUGggaAGCuGCGg- -3' miRNA: 3'- -GGGCCGUUUC---------CGUUCCAU---UCG-CGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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