miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6506 5' -53.1 NC_001847.1 + 111554 1.11 0.003203
Target:  5'- cCCCGGCAAAGGCAAGGUAAGCGCAUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCAUUCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 8741 1.11 0.003203
Target:  5'- cCCCGGCAAAGGCAAGGUAAGCGCAUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCAUUCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 89570 0.8 0.317717
Target:  5'- gCCCGGCGAGGGCGuGG--AGCGCGa- -3'
miRNA:   3'- -GGGCCGUUUCCGUuCCauUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 95938 0.79 0.353684
Target:  5'- gCCCGGCGccggaacgcuggcGGGCGAGcGUGAGCGCAg- -3'
miRNA:   3'- -GGGCCGUu------------UCCGUUC-CAUUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 75340 0.79 0.356944
Target:  5'- uCCCgGGCGGGcGGCAGuGGUAaaAGCGCGUCu -3'
miRNA:   3'- -GGG-CCGUUU-CCGUU-CCAU--UCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 24849 0.78 0.398566
Target:  5'- gUCCGGCAcccaGAGGCAgcugaacAGGUugucgcAGCGCGUCg -3'
miRNA:   3'- -GGGCCGU----UUCCGU-------UCCAu-----UCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 112086 0.78 0.407435
Target:  5'- aCCCGGCGGuccGGcGCAAGGUGgacuggcucgagcGGCGCGUg -3'
miRNA:   3'- -GGGCCGUU---UC-CGUUCCAU-------------UCGCGUAg -5'
6506 5' -53.1 NC_001847.1 + 119539 0.77 0.417332
Target:  5'- gCCGGCAGgcuGGGCAAGGggcGCGCGg- -3'
miRNA:   3'- gGGCCGUU---UCCGUUCCauuCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 67 0.76 0.472798
Target:  5'- gCgGGCGGGGGCGGGGUGggggaugGGCGCGg- -3'
miRNA:   3'- gGgCCGUUUCCGUUCCAU-------UCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 42543 0.76 0.48355
Target:  5'- gCUCGGUGAGGGCGAGGacgcGGcCGCGUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCau--UC-GCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 54536 0.76 0.493425
Target:  5'- aCCgCGGCGGGGGCGGGGgcggggAAGaCGCAgUCg -3'
miRNA:   3'- -GG-GCCGUUUCCGUUCCa-----UUC-GCGU-AG- -5'
6506 5' -53.1 NC_001847.1 + 119403 0.76 0.513445
Target:  5'- gUCGGCAuAGGCGcccuccAGGUu-GCGCAUCg -3'
miRNA:   3'- gGGCCGUuUCCGU------UCCAuuCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 51528 0.76 0.513445
Target:  5'- gCCGGC--AGGCGGGGgcGGCGCccaggcGUCg -3'
miRNA:   3'- gGGCCGuuUCCGUUCCauUCGCG------UAG- -5'
6506 5' -53.1 NC_001847.1 + 14222 0.75 0.533789
Target:  5'- gCCGGcCGGGGGCGuGGUGAGgGCAa- -3'
miRNA:   3'- gGGCC-GUUUCCGUuCCAUUCgCGUag -5'
6506 5' -53.1 NC_001847.1 + 95160 0.75 0.554412
Target:  5'- gCCGGCAu-GGCGGGG--GGCGCgAUCg -3'
miRNA:   3'- gGGCCGUuuCCGUUCCauUCGCG-UAG- -5'
6506 5' -53.1 NC_001847.1 + 8614 0.74 0.575264
Target:  5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3'
miRNA:   3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5'
6506 5' -53.1 NC_001847.1 + 111427 0.74 0.575264
Target:  5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3'
miRNA:   3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5'
6506 5' -53.1 NC_001847.1 + 32878 0.74 0.59629
Target:  5'- uCCUGGCGcuggAGGGCAcGGUGcGCGCcgCg -3'
miRNA:   3'- -GGGCCGU----UUCCGUuCCAUuCGCGuaG- -5'
6506 5' -53.1 NC_001847.1 + 134650 0.74 0.606848
Target:  5'- gCCGGCAGcAGGCGcGG-AGGCGCGg- -3'
miRNA:   3'- gGGCCGUU-UCCGUuCCaUUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 19890 0.74 0.617427
Target:  5'- gCUGGCGGGcGCGAGGUAgaAGCGCAc- -3'
miRNA:   3'- gGGCCGUUUcCGUUCCAU--UCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.