miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 33872 0.72 0.141849
Target:  5'- -gGGGGGCGGGcagugaggaGGGAcgaggGGAGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCC---------CCCU-----CCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 76405 0.72 0.145274
Target:  5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3'
miRNA:   3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 32954 0.71 0.148775
Target:  5'- -gGGGGGCGGaggaggccGGGGAGGccagaGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCC--------CCCCUCC-----UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 88257 0.71 0.156008
Target:  5'- gCGGggcgccGGGCGGGgacGGGGGGAGCGCuucgCCUGc -3'
miRNA:   3'- gGCC------CCCGCCC---CCCUCCUCGCG----GGAU- -5'
6507 3' -68.6 NC_001847.1 + 84538 0.71 0.156008
Target:  5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3'
miRNA:   3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 128722 0.71 0.159742
Target:  5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3'
miRNA:   3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 25909 0.71 0.159742
Target:  5'- gCGGGGuGCGaGGGGGAGGGGgGUgguggCCg- -3'
miRNA:   3'- gGCCCC-CGC-CCCCCUCCUCgCG-----GGau -5'
6507 3' -68.6 NC_001847.1 + 11240 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 114053 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 57660 0.7 0.175498
Target:  5'- cUCGGGccGGCGGGccGGGccGGGCGCCCg- -3'
miRNA:   3'- -GGCCC--CCGCCC--CCCucCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 35 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 102848 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 32222 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 54452 0.7 0.179648
Target:  5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3'
miRNA:   3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5'
6507 3' -68.6 NC_001847.1 + 135035 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 130727 0.7 0.192622
Target:  5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3'
miRNA:   3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 53834 0.7 0.194413
Target:  5'- gCGGGGGCGcugaagagccggcgcGGGGGucaGGGGGUGCUgUGg -3'
miRNA:   3'- gGCCCCCGC---------------CCCCC---UCCUCGCGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 115554 0.69 0.201722
Target:  5'- cCCGgaucGGGGCGGGGaGGGGGGCGaaacuCCUUAa -3'
miRNA:   3'- -GGC----CCCCGCCCCcCUCCUCGC-----GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 34667 0.69 0.20641
Target:  5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3'
miRNA:   3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 95160 0.69 0.21071
Target:  5'- gCCGGcauGGCGGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCc--CCGCCCCCC-------UCCUCGCGggau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.