miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 95253 0.74 0.098415
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCCg-- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 61319 0.74 0.101101
Target:  5'- gCGGGuGcGCGGGGcGGGGcGGGCGCgCCUAg -3'
miRNA:   3'- gGCCC-C-CGCCCC-CCUC-CUCGCG-GGAU- -5'
6507 3' -68.6 NC_001847.1 + 15108 0.74 0.103602
Target:  5'- -aGGGGGCGGucGGGGGAGgGCCUa- -3'
miRNA:   3'- ggCCCCCGCCccCCUCCUCgCGGGau -5'
6507 3' -68.6 NC_001847.1 + 130893 0.73 0.106162
Target:  5'- gCGGGgacugaGGCGGGGGGcGGcGGUGCCCUc -3'
miRNA:   3'- gGCCC------CCGCCCCCCuCC-UCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 28080 0.73 0.106162
Target:  5'- gCGGGgacugaGGCGGGGGGcGGcGGUGCCCUc -3'
miRNA:   3'- gGCCC------CCGCCCCCCuCC-UCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 109653 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 6840 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 79542 0.73 0.113925
Target:  5'- gUCGGGGcCGGGGGGgcuggggcucgcgGGGGGCGCCg-- -3'
miRNA:   3'- -GGCCCCcGCCCCCC-------------UCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 24333 0.73 0.119584
Target:  5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3'
miRNA:   3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 127146 0.73 0.119584
Target:  5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3'
miRNA:   3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 68221 0.73 0.122807
Target:  5'- -aGGGGGaagGGGGGGAGGGcaacgcGCGCgCUAa -3'
miRNA:   3'- ggCCCCCg--CCCCCCUCCU------CGCGgGAU- -5'
6507 3' -68.6 NC_001847.1 + 32076 0.72 0.125504
Target:  5'- gCGGGGGCcggggaagauuGGGGGGAGGGgggaaacgcggcuGCGgCCCg- -3'
miRNA:   3'- gGCCCCCG-----------CCCCCCUCCU-------------CGC-GGGau -5'
6507 3' -68.6 NC_001847.1 + 113684 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 10871 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 54914 0.72 0.132012
Target:  5'- cCCGGGagcucGCGGGGGucuuGAGCGCCCUGc -3'
miRNA:   3'- -GGCCCc----CGCCCCCcuc-CUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 70697 0.72 0.135219
Target:  5'- gCCGcGGGCGGcGGcGGGGGCGCCCg- -3'
miRNA:   3'- -GGCcCCCGCCcCCcUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 111794 0.72 0.138497
Target:  5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 132731 0.72 0.139829
Target:  5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3'
miRNA:   3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 114930 0.72 0.141849
Target:  5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3'
miRNA:   3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 8981 0.72 0.141849
Target:  5'- gCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.