miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 111432 1.06 0.00032
Target:  5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 8619 1.06 0.00032
Target:  5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 54542 0.84 0.018259
Target:  5'- gCGGGGGCGGGGGcGGGGAagacgcagucGCGCCCg- -3'
miRNA:   3'- gGCCCCCGCCCCC-CUCCU----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 31701 0.83 0.018732
Target:  5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 134514 0.83 0.018732
Target:  5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 134948 0.82 0.022978
Target:  5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3'
miRNA:   3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5'
6507 3' -68.6 NC_001847.1 + 32135 0.82 0.022978
Target:  5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3'
miRNA:   3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5'
6507 3' -68.6 NC_001847.1 + 110237 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 7424 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 56825 0.78 0.046758
Target:  5'- cCUGGGGGCGcGGGGaGGGGGCGgCCCa- -3'
miRNA:   3'- -GGCCCCCGC-CCCCcUCCUCGC-GGGau -5'
6507 3' -68.6 NC_001847.1 + 102683 0.77 0.054373
Target:  5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 71 0.76 0.06642
Target:  5'- gCGGGGGCGGGGuGGGGGAuggGCGCg--- -3'
miRNA:   3'- gGCCCCCGCCCC-CCUCCU---CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 15334 0.76 0.06642
Target:  5'- gCGGGGGCGGGcGGGGGGuGCGUg--- -3'
miRNA:   3'- gGCCCCCGCCC-CCCUCCuCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 8475 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 111288 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 84466 0.75 0.07904
Target:  5'- gUGGGGaGCGGGGGGGGGGGCGg---- -3'
miRNA:   3'- gGCCCC-CGCCCCCCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 11822 0.75 0.083048
Target:  5'- aCGGcacagcGcGCGGGGGGGGGGGCGCCUa- -3'
miRNA:   3'- gGCCc-----C-CGCCCCCCUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 75009 0.74 0.091654
Target:  5'- gCCGGcGGGCGGGGGGccagcGGGcagaaGGCGCCg-- -3'
miRNA:   3'- -GGCC-CCCGCCCCCC-----UCC-----UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 46784 0.74 0.093934
Target:  5'- -aGGGGG-GGGGGGGGGAGgGCUa-- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 54518 0.74 0.096268
Target:  5'- -gGGGGGCGGuGGGGcGGGGcCGUCCg- -3'
miRNA:   3'- ggCCCCCGCC-CCCCuCCUC-GCGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.