miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 35 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 71 0.76 0.06642
Target:  5'- gCGGGGGCGGGGuGGGGGAuggGCGCg--- -3'
miRNA:   3'- gGCCCCCGCCCC-CCUCCU---CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 3983 0.69 0.229723
Target:  5'- gCCGGGGGcCGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCC-GCC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 5285 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 6840 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 7424 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 7627 0.67 0.282379
Target:  5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3'
miRNA:   3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5'
6507 3' -68.6 NC_001847.1 + 8475 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 8619 1.06 0.00032
Target:  5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 8981 0.72 0.141849
Target:  5'- gCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 10871 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 11240 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 11822 0.75 0.083048
Target:  5'- aCGGcacagcGcGCGGGGGGGGGGGCGCCUa- -3'
miRNA:   3'- gGCCc-----C-CGCCCCCCUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 12647 0.67 0.288578
Target:  5'- gCGGcuGCGGGGGaGAGGAGCGUg--- -3'
miRNA:   3'- gGCCccCGCCCCC-CUCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 12999 0.69 0.211193
Target:  5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3'
miRNA:   3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 15108 0.74 0.103602
Target:  5'- -aGGGGGCGGucGGGGGAGgGCCUa- -3'
miRNA:   3'- ggCCCCCGCCccCCUCCUCgCGGGau -5'
6507 3' -68.6 NC_001847.1 + 15334 0.76 0.06642
Target:  5'- gCGGGGGCGGGcGGGGGGuGCGUg--- -3'
miRNA:   3'- gGCCCCCGCCC-CCCUCCuCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 16584 0.67 0.31444
Target:  5'- gCGGGGuCGGGGcGGcguGGGGUGCCg-- -3'
miRNA:   3'- gGCCCCcGCCCC-CCu--CCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 17800 0.69 0.221044
Target:  5'- aCGGGccccaGCGGGcGGGAGG-GCGCCa-- -3'
miRNA:   3'- gGCCCc----CGCCC-CCCUCCuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 19192 0.68 0.236022
Target:  5'- gCGGGGGCGGGGucuguGGcccagacGGcGAGUGCCgCUGc -3'
miRNA:   3'- gGCCCCCGCCCC-----CC-------UC-CUCGCGG-GAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.