miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 135035 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 134948 0.82 0.022978
Target:  5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3'
miRNA:   3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5'
6507 3' -68.6 NC_001847.1 + 134842 0.68 0.270299
Target:  5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3'
miRNA:   3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 134514 0.83 0.018732
Target:  5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 132731 0.72 0.139829
Target:  5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3'
miRNA:   3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 132690 0.67 0.307814
Target:  5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3'
miRNA:   3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 132414 0.66 0.334263
Target:  5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3'
miRNA:   3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 131029 0.68 0.264416
Target:  5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3'
miRNA:   3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5'
6507 3' -68.6 NC_001847.1 + 130893 0.73 0.106162
Target:  5'- gCGGGgacugaGGCGGGGGGcGGcGGUGCCCUc -3'
miRNA:   3'- gGCCC------CCGCCCCCCuCC-UCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 130727 0.7 0.192622
Target:  5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3'
miRNA:   3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 130007 0.66 0.342018
Target:  5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3'
miRNA:   3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5'
6507 3' -68.6 NC_001847.1 + 129328 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 128904 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 128722 0.71 0.159742
Target:  5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3'
miRNA:   3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 127146 0.73 0.119584
Target:  5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3'
miRNA:   3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 125588 0.67 0.282379
Target:  5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3'
miRNA:   3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 125360 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 124922 0.67 0.282379
Target:  5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3'
miRNA:   3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 124720 0.66 0.323897
Target:  5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3'
miRNA:   3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 124381 0.66 0.334963
Target:  5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3'
miRNA:   3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.