miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 128722 0.71 0.159742
Target:  5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3'
miRNA:   3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 127146 0.73 0.119584
Target:  5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3'
miRNA:   3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 32076 0.72 0.125504
Target:  5'- gCGGGGGCcggggaagauuGGGGGGAGGGgggaaacgcggcuGCGgCCCg- -3'
miRNA:   3'- gGCCCCCG-----------CCCCCCUCCU-------------CGC-GGGau -5'
6507 3' -68.6 NC_001847.1 + 113684 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 111794 0.72 0.138497
Target:  5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 132731 0.72 0.139829
Target:  5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3'
miRNA:   3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 114930 0.72 0.141849
Target:  5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3'
miRNA:   3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 76405 0.72 0.145274
Target:  5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3'
miRNA:   3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 84538 0.71 0.156008
Target:  5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3'
miRNA:   3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 109653 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 130893 0.73 0.106162
Target:  5'- gCGGGgacugaGGCGGGGGGcGGcGGUGCCCUc -3'
miRNA:   3'- gGCCC------CCGCCCCCCuCC-UCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 54518 0.74 0.096268
Target:  5'- -gGGGGGCGGuGGGGcGGGGcCGUCCg- -3'
miRNA:   3'- ggCCCCCGCC-CCCCuCCUC-GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 134514 0.83 0.018732
Target:  5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 134948 0.82 0.022978
Target:  5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3'
miRNA:   3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5'
6507 3' -68.6 NC_001847.1 + 110237 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 102683 0.77 0.054373
Target:  5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 71 0.76 0.06642
Target:  5'- gCGGGGGCGGGGuGGGGGAuggGCGCg--- -3'
miRNA:   3'- gGCCCCCGCCCC-CCUCCU---CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 84466 0.75 0.07904
Target:  5'- gUGGGGaGCGGGGGGGGGGGCGg---- -3'
miRNA:   3'- gGCCCC-CGCCCCCCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 111288 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 75009 0.74 0.091654
Target:  5'- gCCGGcGGGCGGGGGGccagcGGGcagaaGGCGCCg-- -3'
miRNA:   3'- -GGCC-CCCGCCCCCC-----UCC-----UCGCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.