Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 27194 | 0.66 | 0.342018 |
Target: 5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3' miRNA: 3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 122215 | 0.68 | 0.270299 |
Target: 5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3' miRNA: 3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 28216 | 0.68 | 0.264416 |
Target: 5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3' miRNA: 3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 8619 | 1.06 | 0.00032 |
Target: 5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3' miRNA: 3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 29601 | 0.66 | 0.334263 |
Target: 5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3' miRNA: 3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 105585 | 0.66 | 0.327326 |
Target: 5'- gCCGGcacGGCGuccgugcGGGGGAacucGAGCGCCCg- -3' miRNA: 3'- -GGCCc--CCGC-------CCCCCUc---CUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 90754 | 0.67 | 0.31444 |
Target: 5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3' miRNA: 3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 16584 | 0.67 | 0.31444 |
Target: 5'- gCGGGGuCGGGGcGGcguGGGGUGCCg-- -3' miRNA: 3'- gGCCCCcGCCCC-CCu--CCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 22775 | 0.67 | 0.282379 |
Target: 5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3' miRNA: 3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32029 | 0.68 | 0.270299 |
Target: 5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3' miRNA: 3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 7627 | 0.67 | 0.282379 |
Target: 5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3' miRNA: 3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 33117 | 0.67 | 0.30389 |
Target: 5'- gCCGGGGGCcccguaccugcggcgGGuGGuGGAGugggucgaGGGCGCUCUGg -3' miRNA: 3'- -GGCCCCCG---------------CC-CC-CCUC--------CUCGCGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 5285 | 0.66 | 0.342018 |
Target: 5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3' miRNA: 3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 52707 | 0.68 | 0.270299 |
Target: 5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3' miRNA: 3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 51528 | 0.66 | 0.334963 |
Target: 5'- gCCGGcaGGCGGGGGc---GGCGCCCa- -3' miRNA: 3'- -GGCCc-CCGCCCCCcuccUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 29877 | 0.67 | 0.307814 |
Target: 5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3' miRNA: 3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32682 | 0.68 | 0.270299 |
Target: 5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3' miRNA: 3'- -GGCccCCGCCccCCUCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32915 | 0.68 | 0.270299 |
Target: 5'- gCCGGGGccGCGGacGGGAGGAG-GCCg-- -3' miRNA: 3'- -GGCCCC--CGCCc-CCCUCCUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 21568 | 0.66 | 0.334963 |
Target: 5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3' miRNA: 3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 124720 | 0.66 | 0.323897 |
Target: 5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3' miRNA: 3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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