miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 106795 0.67 0.312441
Target:  5'- gCCGGGGGCccGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCCG--CC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 29877 0.67 0.307814
Target:  5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3'
miRNA:   3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 132690 0.67 0.307814
Target:  5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3'
miRNA:   3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 52977 0.67 0.307814
Target:  5'- -aGGGGGgGGGGaaGGGGGAcGCGCa--- -3'
miRNA:   3'- ggCCCCCgCCCC--CCUCCU-CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 33117 0.67 0.30389
Target:  5'- gCCGGGGGCcccguaccugcggcgGGuGGuGGAGugggucgaGGGCGCUCUGg -3'
miRNA:   3'- -GGCCCCCG---------------CC-CC-CCUC--------CUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 54386 0.67 0.301295
Target:  5'- gCGGcGGGCGGccgcGGGcGAGGcgGGCGCCg-- -3'
miRNA:   3'- gGCC-CCCGCC----CCC-CUCC--UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 12647 0.67 0.288578
Target:  5'- gCGGcuGCGGGGGaGAGGAGCGUg--- -3'
miRNA:   3'- gGCCccCGCCCCC-CUCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 22775 0.67 0.282379
Target:  5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3'
miRNA:   3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 22109 0.67 0.282379
Target:  5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3'
miRNA:   3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 124922 0.67 0.282379
Target:  5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3'
miRNA:   3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 53614 0.67 0.282379
Target:  5'- gUGGcGGGCGGcGGGGuGGcacCGCCCg- -3'
miRNA:   3'- gGCC-CCCGCC-CCCCuCCuc-GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 45106 0.67 0.282379
Target:  5'- aCGGGGGUGGGGGcAGacaacaGAGCGCg--- -3'
miRNA:   3'- gGCCCCCGCCCCCcUC------CUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 125588 0.67 0.282379
Target:  5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3'
miRNA:   3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 7627 0.67 0.282379
Target:  5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3'
miRNA:   3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5'
6507 3' -68.6 NC_001847.1 + 110440 0.67 0.282379
Target:  5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3'
miRNA:   3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5'
6507 3' -68.6 NC_001847.1 + 101089 0.67 0.276286
Target:  5'- gCCGGGucGGCGGGGcGGGcGGGcGCGUUCg- -3'
miRNA:   3'- -GGCCC--CCGCCCC-CCU-CCU-CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 62489 0.67 0.275682
Target:  5'- gCCGGcGGGCGGccgcGGGGuGGcggccacAGCcGCCCUu -3'
miRNA:   3'- -GGCC-CCCGCC----CCCCuCC-------UCG-CGGGAu -5'
6507 3' -68.6 NC_001847.1 + 134842 0.68 0.270299
Target:  5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3'
miRNA:   3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 32682 0.68 0.270299
Target:  5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3'
miRNA:   3'- -GGCccCCGCCccCCUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 52707 0.68 0.270299
Target:  5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3'
miRNA:   3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.