miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 128171 0.66 0.614916
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGc---UCGUCCCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 130198 0.66 0.614916
Target:  5'- cGCGcGauAGCGAGguugcuCGGGGGGGCGCuguugccgccGGCg -3'
miRNA:   3'- -CGC-CacUCGCUC------GUCCCUCCGCG----------CCG- -5'
6509 3' -62.1 NC_001847.1 + 25283 0.66 0.614916
Target:  5'- gGgGGUuagcAGCGGGguGGGAaGCuGCGGUg -3'
miRNA:   3'- -CgCCAc---UCGCUCguCCCUcCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 54727 0.66 0.614916
Target:  5'- uGCGcGUGAGCGucuaCGGGGAcGUGCuGCu -3'
miRNA:   3'- -CGC-CACUCGCuc--GUCCCUcCGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 113143 0.66 0.614916
Target:  5'- gGCGGacGAG-GAG-GGGGAGGagaacgGCGGCg -3'
miRNA:   3'- -CGCCa-CUCgCUCgUCCCUCCg-----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 128096 0.66 0.614916
Target:  5'- gGgGGUuagcAGCGGGguGGGAaGCuGCGGUg -3'
miRNA:   3'- -CgCCAc---UCGCUCguCCCUcCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 22651 0.66 0.61393
Target:  5'- gGCGGgcuugccccGGGCGGGCGagggaucGGGGGGaugGgGGCg -3'
miRNA:   3'- -CGCCa--------CUCGCUCGU-------CCCUCCg--CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 91251 0.66 0.61393
Target:  5'- gGCGGUGAGCacGGCGaaggcaaagccccGGaAGGC-CGGCa -3'
miRNA:   3'- -CGCCACUCGc-UCGU-------------CCcUCCGcGCCG- -5'
6509 3' -62.1 NC_001847.1 + 132429 0.66 0.61393
Target:  5'- cGUGGUGgggcagguucgcaAGCGcaAGCuGGaGGGCGCGGa -3'
miRNA:   3'- -CGCCAC-------------UCGC--UCGuCCcUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 125464 0.66 0.61393
Target:  5'- gGCGGgcuugccccGGGCGGGCGagggaucGGGGGGaugGgGGCg -3'
miRNA:   3'- -CGCCa--------CUCGCUCGU-------CCCUCCg--CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 134906 0.66 0.612944
Target:  5'- -aGGgagGAG-GAGCgAGGGAGGaggagcaauaugGCGGCa -3'
miRNA:   3'- cgCCa--CUCgCUCG-UCCCUCCg-----------CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 96780 0.66 0.609
Target:  5'- cCGGUGccGGCGcuggggcugaagcugGGUcGGGGGGCGCGcaGCg -3'
miRNA:   3'- cGCCAC--UCGC---------------UCGuCCCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 14568 0.66 0.605059
Target:  5'- cGCGG-GuGCuGGCGGGc--GCGCGGCu -3'
miRNA:   3'- -CGCCaCuCGcUCGUCCcucCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 66959 0.66 0.605059
Target:  5'- uGCGGgcuuuuUGAGCcgucgcugcaGAGgCGGGcugcGGCGCGGCg -3'
miRNA:   3'- -CGCC------ACUCG----------CUC-GUCCcu--CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134238 0.66 0.605059
Target:  5'- cCGGcGGGCG-GCGGccGGcGGcCGCGGCg -3'
miRNA:   3'- cGCCaCUCGCuCGUC--CCuCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 27927 0.66 0.605059
Target:  5'- cGCGGagGAcGCGGaCAGGccuGGGcCGCGGCg -3'
miRNA:   3'- -CGCCa-CU-CGCUcGUCCc--UCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 123801 0.66 0.605059
Target:  5'- cGCGGcG-GCG-GCAGcGGcAGGCGCcguccuGGCg -3'
miRNA:   3'- -CGCCaCuCGCuCGUC-CC-UCCGCG------CCG- -5'
6509 3' -62.1 NC_001847.1 + 56546 0.66 0.605059
Target:  5'- cGCGGcgGcAGCuc-CAGGGA-GCGCGGCc -3'
miRNA:   3'- -CGCCa-C-UCGcucGUCCCUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 44265 0.66 0.605059
Target:  5'- uCGGUGAuuacgGCGAucuaccacaccgGCGGcGcGGCGCGGCg -3'
miRNA:   3'- cGCCACU-----CGCU------------CGUCcCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 31425 0.66 0.605059
Target:  5'- cCGGcGGGCG-GCGGccGGcGGcCGCGGCg -3'
miRNA:   3'- cGCCaCUCGCuCGUC--CCuCC-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.