miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 107043 0.66 0.628735
Target:  5'- gGCGGUGucGCGcGCGgccccGGGcAGGCGCcacagcaccagaccgGGCa -3'
miRNA:   3'- -CGCCACu-CGCuCGU-----CCC-UCCGCG---------------CCG- -5'
6509 3' -62.1 NC_001847.1 + 22923 0.66 0.624786
Target:  5'- uGgGGUGGGCuGGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCGuCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 41820 0.66 0.624786
Target:  5'- cGCGGgcGGGCGGcGCGGGucccaGGGCuGgGGCa -3'
miRNA:   3'- -CGCCa-CUCGCU-CGUCCc----UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 120675 0.66 0.624786
Target:  5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3'
miRNA:   3'- cGCCACUCG---CUCgucc-CUCCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 125900 0.66 0.624786
Target:  5'- uGgGGUGGGCuGGGCuGGGguGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCGuCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 43290 0.66 0.624786
Target:  5'- cGCGcGUGcGCGGGCuGcGGAGuacgaaGCGCGcGCu -3'
miRNA:   3'- -CGC-CACuCGCUCGuC-CCUC------CGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 117398 0.66 0.624786
Target:  5'- cGCGGguuucgGuGCGcGCGGuGGAcgcuucGCGCGGCu -3'
miRNA:   3'- -CGCCa-----CuCGCuCGUC-CCUc-----CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 116453 0.66 0.624786
Target:  5'- gGCGGUGAcGCGGGCcGuGcuGCGgGGCc -3'
miRNA:   3'- -CGCCACU-CGCUCGuCcCucCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 56871 0.66 0.624786
Target:  5'- cGCaGa-GGCGAGCAGGcaguccaGGuGCGCGGCg -3'
miRNA:   3'- -CGcCacUCGCUCGUCCc------UC-CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 119159 0.66 0.624786
Target:  5'- cGCGGcc-GCc-GCGGGGcGGCGgGGCa -3'
miRNA:   3'- -CGCCacuCGcuCGUCCCuCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 51375 0.66 0.624786
Target:  5'- aCGGUGAcGCucGCGGaGGccgcGGuCGCGGCg -3'
miRNA:   3'- cGCCACU-CGcuCGUC-CCu---CC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 23087 0.66 0.624786
Target:  5'- uGgGGUGGGCuGGGCuGGGguGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCGuCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 43443 0.66 0.624786
Target:  5'- cGCGGUgcccgaGAGCGaAGC-GGGAGcCGCaGCc -3'
miRNA:   3'- -CGCCA------CUCGC-UCGuCCCUCcGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 69103 0.66 0.623798
Target:  5'- cGCGGacGGGCGGGCcgcguucucGGcguacguGGucuuuGGCGCGGCg -3'
miRNA:   3'- -CGCCa-CUCGCUCG---------UC-------CCu----CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 18174 0.66 0.618863
Target:  5'- gGCGGUcGGCGucGCAGGGcAgccggagcaccgccaGGCaGCGGUa -3'
miRNA:   3'- -CGCCAcUCGCu-CGUCCC-U---------------CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 128171 0.66 0.614916
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGc---UCGUCCCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 113143 0.66 0.614916
Target:  5'- gGCGGacGAG-GAG-GGGGAGGagaacgGCGGCg -3'
miRNA:   3'- -CGCCa-CUCgCUCgUCCCUCCg-----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130198 0.66 0.614916
Target:  5'- cGCGcGauAGCGAGguugcuCGGGGGGGCGCuguugccgccGGCg -3'
miRNA:   3'- -CGC-CacUCGCUC------GUCCCUCCGCG----------CCG- -5'
6509 3' -62.1 NC_001847.1 + 128096 0.66 0.614916
Target:  5'- gGgGGUuagcAGCGGGguGGGAaGCuGCGGUg -3'
miRNA:   3'- -CgCCAc---UCGCUCguCCCUcCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 54727 0.66 0.614916
Target:  5'- uGCGcGUGAGCGucuaCGGGGAcGUGCuGCu -3'
miRNA:   3'- -CGC-CACUCGCuc--GUCCCUcCGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.