miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 5221 0.73 0.265863
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGcUCGUCCCuC-CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6057 1.03 0.001986
Target:  5'- gGCGGUGAGCaAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGcUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6094 0.7 0.37016
Target:  5'- cGCGGaGGcGCGAGaCGcccGcGAGGCGCGGCg -3'
miRNA:   3'- -CGCCaCU-CGCUC-GUc--C-CUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6151 1.13 0.000408
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGCUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6420 0.71 0.339807
Target:  5'- uCGGggaaGGCGAGUcccgAGGGGuuaggcGGCGCGGCg -3'
miRNA:   3'- cGCCac--UCGCUCG----UCCCU------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6658 0.66 0.634661
Target:  5'- cGUGGUGGauguaGAGCgAGGcuAGGcCGCGGCg -3'
miRNA:   3'- -CGCCACUcg---CUCG-UCCc-UCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6839 0.75 0.200642
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGcuCgUCCCUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 7239 0.67 0.575624
Target:  5'- aGCGGcUGGuCGGGUGGcugugcGGGCGCGGCg -3'
miRNA:   3'- -CGCC-ACUcGCUCGUCcc----UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 7421 0.69 0.46264
Target:  5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3'
miRNA:   3'- cGCCa-CUCgCUCgUCCCUCCG---------CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 7620 0.7 0.402314
Target:  5'- gGUGGggGGGUGGGUGGGGGGGUGgaGGg -3'
miRNA:   3'- -CGCCa-CUCGCUCGUCCCUCCGCg-CCg -5'
6509 3' -62.1 NC_001847.1 + 7731 0.71 0.354754
Target:  5'- cGCaGG-GcGCGGGCGcGGAGGCgGCGGCc -3'
miRNA:   3'- -CG-CCaCuCGCUCGUcCCUCCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 8062 0.67 0.527387
Target:  5'- cGCGGcccGCGcGCagAGGGGGGCaccgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGCuCG--UCCCUCCG------CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 8129 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 8464 0.66 0.59522
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---CUCGUC---------CCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 8690 0.7 0.410626
Target:  5'- aCGGgGGGCuaGAGgAGGGGGGCGCacuGCa -3'
miRNA:   3'- cGCCaCUCG--CUCgUCCCUCCGCGc--CG- -5'
6509 3' -62.1 NC_001847.1 + 8982 0.71 0.318252
Target:  5'- cCGG-GGGCGGGCAGacGGGGGUGgGGg -3'
miRNA:   3'- cGCCaCUCGCUCGUC--CCUCCGCgCCg -5'
6509 3' -62.1 NC_001847.1 + 9510 0.68 0.489913
Target:  5'- aGCGGacccGAGcCGAGC-GGGcGGCGCGcuaGCg -3'
miRNA:   3'- -CGCCa---CUC-GCUCGuCCCuCCGCGC---CG- -5'
6509 3' -62.1 NC_001847.1 + 10127 0.69 0.46264
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGCuCGuCCCUCCGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 10127 0.71 0.326034
Target:  5'- cGCGGcGAGCGGGCccggccguagcgcgaGcGGGAGggcuuuuucgacgcGCGCGGCu -3'
miRNA:   3'- -CGCCaCUCGCUCG---------------U-CCCUC--------------CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 10330 0.66 0.614916
Target:  5'- gGCGGacGAG-GAG-GGGGAGGagaacgGCGGCg -3'
miRNA:   3'- -CGCCa-CUCgCUCgUCCCUCCg-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.