miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 32340 0.77 0.145767
Target:  5'- cGCGGcgcgGAGgGGGCccagcccccgcgcGGGGGGGCGcCGGCg -3'
miRNA:   3'- -CGCCa---CUCgCUCG-------------UCCCUCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 54385 0.77 0.146129
Target:  5'- uGCGGcGGGCGGccGCGGGcGAGGCG-GGCg -3'
miRNA:   3'- -CGCCaCUCGCU--CGUCC-CUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 48485 0.76 0.153158
Target:  5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3'
miRNA:   3'- -CGCCa--CUCGC-UCG-------UCCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 27521 0.76 0.156209
Target:  5'- cGCGGcG-GCG-GCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGCuCGUCCCU--------------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 84528 0.76 0.16938
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGCUCGUCCC--UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 424 0.75 0.182207
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGCUCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 51518 0.75 0.182207
Target:  5'- cCGGUGcGGCGccGGCAGGcGGGgGCGGCg -3'
miRNA:   3'- cGCCAC-UCGC--UCGUCCcUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 103237 0.75 0.182207
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGCUCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 121362 0.75 0.18667
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGCUCguCCC----UCCGcgCCG- -5'
6509 3' -62.1 NC_001847.1 + 87888 0.75 0.189852
Target:  5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCGC--------------UCGUCCC---------UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 77109 0.75 0.19123
Target:  5'- cGCGGU-AGCG-GCGGGGcugcuucaAGGCGCGcGCg -3'
miRNA:   3'- -CGCCAcUCGCuCGUCCC--------UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 134515 0.75 0.200642
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGCUCguCCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 6839 0.75 0.200642
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGcuCgUCCCUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 115676 0.75 0.200642
Target:  5'- uGCgGGUGAGCGGcugcGCGGGGGcgagagccGGCuGCGGCc -3'
miRNA:   3'- -CG-CCACUCGCU----CGUCCCU--------CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 109652 0.75 0.200642
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGcuCgUCCCUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 31702 0.75 0.200642
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGCUCguCCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 121189 0.75 0.205498
Target:  5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3'
miRNA:   3'- -CGCCaCUCGCU-------CGUCCCu--------------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 95759 0.74 0.210455
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGCU-CGUCC------------CUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 95705 0.74 0.210455
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGCU-CGUCC------------CUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 95651 0.74 0.210455
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGCU-CGUCC------------CUCCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.