miRNA display CGI


Results 1 - 20 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 108964 1.13 0.000408
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGCUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6151 1.13 0.000408
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGCUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6057 1.03 0.001986
Target:  5'- gGCGGUGAGCaAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGcUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 108870 1.03 0.001986
Target:  5'- gGCGGUGAGCaAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGcUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 100535 0.83 0.052553
Target:  5'- cGCGGagUGGGUGGGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGCUCGUCCCU---CC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 15333 0.82 0.061449
Target:  5'- aGCGG-GGGCGGGCGGGGGGuGCGUgauGGCu -3'
miRNA:   3'- -CGCCaCUCGCUCGUCCCUC-CGCG---CCG- -5'
6509 3' -62.1 NC_001847.1 + 43237 0.82 0.063067
Target:  5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCACUCgCuCGU-CCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130559 0.81 0.079599
Target:  5'- gGCGGauGGUGGGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGCUCGUCCCUCC-GCGCCg -5'
6509 3' -62.1 NC_001847.1 + 27746 0.81 0.079599
Target:  5'- gGCGGauGGUGGGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGCUCGUCCCUCC-GCGCCg -5'
6509 3' -62.1 NC_001847.1 + 84458 0.8 0.081674
Target:  5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3'
miRNA:   3'- -CGCCa-------CUCGCUCgUCCCUCCGCgCCg -5'
6509 3' -62.1 NC_001847.1 + 102662 0.8 0.081674
Target:  5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3'
miRNA:   3'- cGCCaCUCGC--------UCGUCCCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 66 0.8 0.081674
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGCUCguCCC----UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 59550 0.8 0.092844
Target:  5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3'
miRNA:   3'- -CGCCACUCgC-UCGUCCCU-CCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 25978 0.78 0.122398
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGCUCGUCC-CUC-CGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 128791 0.78 0.122398
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGCUCGUCC-CUC-CGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 2073 0.78 0.122706
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGCUCGU------CCCUc--CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 104886 0.78 0.122706
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGCUCGU------CCCUc--CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 33009 0.78 0.129017
Target:  5'- aGCGGccgggGGGCGcGCGGGGcgAGGCGCGGa -3'
miRNA:   3'- -CGCCa----CUCGCuCGUCCC--UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 70243 0.77 0.139049
Target:  5'- cGCGcG-GGGCGGGCGGcGGGcGCGCGGCg -3'
miRNA:   3'- -CGC-CaCUCGCUCGUC-CCUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 33829 0.77 0.142549
Target:  5'- -aGGgGAGCGGGCuuGGGAGuCGCGGCg -3'
miRNA:   3'- cgCCaCUCGCUCGu-CCCUCcGCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.