miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 123801 0.66 0.605059
Target:  5'- cGCGGcG-GCG-GCAGcGGcAGGCGCcguccuGGCg -3'
miRNA:   3'- -CGCCaCuCGCuCGUC-CC-UCCGCG------CCG- -5'
6509 3' -62.1 NC_001847.1 + 14568 0.66 0.605059
Target:  5'- cGCGG-GuGCuGGCGGGc--GCGCGGCu -3'
miRNA:   3'- -CGCCaCuCGcUCGUCCcucCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 49046 0.66 0.585407
Target:  5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGCuCGUC-----CC----UCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 113143 0.66 0.614916
Target:  5'- gGCGGacGAG-GAG-GGGGAGGagaacgGCGGCg -3'
miRNA:   3'- -CGCCa-CUCgCUCgUCCCUCCg-----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 103299 0.66 0.585407
Target:  5'- aGCGGcG-GCG-GCGGGGcGGCcGCGcGCc -3'
miRNA:   3'- -CGCCaCuCGCuCGUCCCuCCG-CGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 34492 0.66 0.585407
Target:  5'- gGCGGcgagGAuGCGAGCGaggccgacGcGGAcGGCGcCGGCg -3'
miRNA:   3'- -CGCCa---CU-CGCUCGU--------C-CCU-CCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 34461 0.66 0.585407
Target:  5'- cGCGGUGGccGCcGGCGGcGAGGaUGCGGa -3'
miRNA:   3'- -CGCCACU--CGcUCGUCcCUCC-GCGCCg -5'
6509 3' -62.1 NC_001847.1 + 30461 0.66 0.584427
Target:  5'- -aGGUGGGCcgcuuucugcaGcGCuGGGAcgcgaucGGCGCGGCc -3'
miRNA:   3'- cgCCACUCG-----------CuCGuCCCU-------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 128096 0.66 0.614916
Target:  5'- gGgGGUuagcAGCGGGguGGGAaGCuGCGGUg -3'
miRNA:   3'- -CgCCAc---UCGCUCguCCCUcCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 132361 0.66 0.585407
Target:  5'- cGCGGcccugGAGgcCGccGGCGGGGGcgccGGCGcCGGCg -3'
miRNA:   3'- -CGCCa----CUC--GC--UCGUCCCU----CCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 52519 0.66 0.594238
Target:  5'- cGCGGcc-GCGcGGCccGGGGgauggucgccggaGGGCGCGGCc -3'
miRNA:   3'- -CGCCacuCGC-UCG--UCCC-------------UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 32177 0.66 0.59522
Target:  5'- cGCGGcgGAgcuuggcgcGCGcGCGGcGGAGGUuaccGCGGCc -3'
miRNA:   3'- -CGCCa-CU---------CGCuCGUC-CCUCCG----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 125825 0.66 0.585407
Target:  5'- uGgGGUGGGCuGGGguGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCguCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 111277 0.66 0.59522
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---CUCGUC---------CCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 45503 0.66 0.585407
Target:  5'- cGCccgGGGCGGGCGccgccgccGGGcGGCGCGGa -3'
miRNA:   3'- -CGccaCUCGCUCGU--------CCCuCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 54727 0.66 0.614916
Target:  5'- uGCGcGUGAGCGucuaCGGGGAcGUGCuGCu -3'
miRNA:   3'- -CGC-CACUCGCuc--GUCCCUcCGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 66792 0.66 0.59522
Target:  5'- cCGGcguacgucUGGGCGucGGUAGGcGGGGCGCuGGUc -3'
miRNA:   3'- cGCC--------ACUCGC--UCGUCC-CUCCGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 91251 0.66 0.61393
Target:  5'- gGCGGUGAGCacGGCGaaggcaaagccccGGaAGGC-CGGCa -3'
miRNA:   3'- -CGCCACUCGc-UCGU-------------CCcUCCGcGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134238 0.66 0.605059
Target:  5'- cCGGcGGGCG-GCGGccGGcGGcCGCGGCg -3'
miRNA:   3'- cGCCaCUCGCuCGUC--CCuCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 125464 0.66 0.61393
Target:  5'- gGCGGgcuugccccGGGCGGGCGagggaucGGGGGGaugGgGGCg -3'
miRNA:   3'- -CGCCa--------CUCGCUCGU-------CCCUCCg--CgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.