miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 40 0.67 0.575624
Target:  5'- gGgGGUGuuuuUGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- -CgCCACuc--GCUCgUCCCU----------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 66 0.8 0.081674
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGCUCguCCC----UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 424 0.75 0.182207
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGCUCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 456 0.68 0.49917
Target:  5'- aGCGGcG-GCG-GCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CGCCaCuCGCuCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 486 0.66 0.585407
Target:  5'- aGCGGcG-GCG-GCGGGGcGGCcGCGcGCc -3'
miRNA:   3'- -CGCCaCuCGCuCGUCCCuCCG-CGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 1428 0.7 0.402314
Target:  5'- cGCGGUGcGCGGGCccAGGc--GCGUGGCc -3'
miRNA:   3'- -CGCCACuCGCUCG--UCCcucCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 2073 0.78 0.122706
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGCUCGU------CCCUc--CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 2193 0.67 0.553277
Target:  5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGCUCGU--------------CC--CUCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 2310 0.68 0.480736
Target:  5'- gGCGGcaUGGGCcccAGCAcgcGGGcGGGCaGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGc--UCGU---CCC-UCCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 2748 0.67 0.579533
Target:  5'- gGCGG-GAGCGAGCgAGGGc-GCcucgucgucuucuucGCGGUc -3'
miRNA:   3'- -CGCCaCUCGCUCG-UCCCucCG---------------CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 3138 0.67 0.536927
Target:  5'- cCGG-GAGCccGGCGGcgccGGcGGCGCGGCg -3'
miRNA:   3'- cGCCaCUCGc-UCGUC----CCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 3279 0.7 0.37724
Target:  5'- cGCGGccGGCGAGCAcggcgcgcagcucGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCacUCGCUCGU-------------CC-CUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 3410 0.71 0.3624
Target:  5'- aGCGGgaGAGC-AGCccGGGGGCGCcaGGCg -3'
miRNA:   3'- -CGCCa-CUCGcUCGucCCUCCGCG--CCG- -5'
6509 3' -62.1 NC_001847.1 + 3971 0.68 0.480736
Target:  5'- gGCGGcGAGgGcGCcGGGGGccgggcGCGCGGCc -3'
miRNA:   3'- -CGCCaCUCgCuCGuCCCUC------CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 4539 0.68 0.49917
Target:  5'- cGCGGcGGccGCccGC-GGGuGGCGCGGCg -3'
miRNA:   3'- -CGCCaCU--CGcuCGuCCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 4802 0.73 0.253906
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------CUCGUCCCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 4859 0.69 0.444908
Target:  5'- cGCaGGgGAGgGGGgGGGGcggcGGGCaGCGGCa -3'
miRNA:   3'- -CG-CCaCUCgCUCgUCCC----UCCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 4969 0.72 0.291136
Target:  5'- cGCGccGGGgGGGCAGcuGGGGUGCGGCg -3'
miRNA:   3'- -CGCcaCUCgCUCGUCc-CUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 5000 0.69 0.444908
Target:  5'- cGCGGcaaAGCGcGGCGGcGGcGGCGCGGa -3'
miRNA:   3'- -CGCCac-UCGC-UCGUC-CCuCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 5066 0.74 0.225947
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGCUCGuCCCUC-CgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.