miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 135020 0.71 0.318252
Target:  5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3'
miRNA:   3'- cgCCacuCGCUCGUCCC---UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 134949 0.67 0.575624
Target:  5'- cCGG-GGGCGGGgGcGGGGGCGgGGg -3'
miRNA:   3'- cGCCaCUCGCUCgUcCCUCCGCgCCg -5'
6509 3' -62.1 NC_001847.1 + 134906 0.66 0.612944
Target:  5'- -aGGgagGAG-GAGCgAGGGAGGaggagcaauaugGCGGCa -3'
miRNA:   3'- cgCCa--CUCgCUCG-UCCCUCCg-----------CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134821 0.73 0.265863
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGC---UCGu--CC-CUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 134777 0.66 0.634661
Target:  5'- cGCGGcgcgcgGGGCGGGCcccGGGGCGCGaaGCc -3'
miRNA:   3'- -CGCCa-----CUCGCUCGuccCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 134634 0.72 0.284646
Target:  5'- cGUGGgcuggGGGCGGGcCGGcagcaggcgcGGAGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGCUC-GUC----------CCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 134515 0.75 0.200642
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGCUCguCCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 134388 0.67 0.527387
Target:  5'- gGCGGcGGGCcGGCcucgcccuAGGGGGGCccGCGGg -3'
miRNA:   3'- -CGCCaCUCGcUCG--------UCCCUCCG--CGCCg -5'
6509 3' -62.1 NC_001847.1 + 134238 0.66 0.605059
Target:  5'- cCGGcGGGCG-GCGGccGGcGGcCGCGGCg -3'
miRNA:   3'- cGCCaCUCGCuCGUC--CCuCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134198 0.67 0.575624
Target:  5'- aGCGuG-GAGCGGcgcgcGCGGGccGAGG-GCGGCg -3'
miRNA:   3'- -CGC-CaCUCGCU-----CGUCC--CUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134023 0.7 0.410626
Target:  5'- gGCGGUcucgccAGCGucGCAGGGGcaCGCGGCg -3'
miRNA:   3'- -CGCCAc-----UCGCu-CGUCCCUccGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 133589 0.7 0.37016
Target:  5'- cGCGGgcgcgcuaucGGGCGGGCGGGcuuGG-GCGGCa -3'
miRNA:   3'- -CGCCa---------CUCGCUCGUCCcu-CCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 133398 0.7 0.386016
Target:  5'- cGCGGUGGaguaccucuGCGcGCGGcuGGccgcGGCGCGGCg -3'
miRNA:   3'- -CGCCACU---------CGCuCGUC--CCu---CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 133146 0.69 0.426707
Target:  5'- cGUGGUGGugcucuacgacccGCu-GCccGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGcuCG--UCCCUCCGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 132429 0.66 0.61393
Target:  5'- cGUGGUGgggcagguucgcaAGCGcaAGCuGGaGGGCGCGGa -3'
miRNA:   3'- -CGCCAC-------------UCGC--UCGuCCcUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 132361 0.66 0.585407
Target:  5'- cGCGGcccugGAGgcCGccGGCGGGGGcgccGGCGcCGGCg -3'
miRNA:   3'- -CGCCa----CUC--GC--UCGUCCCU----CCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 132133 0.71 0.339807
Target:  5'- cGCGGcccGCGAcGCGGuGGAGcgcGCGCGGCu -3'
miRNA:   3'- -CGCCacuCGCU-CGUC-CCUC---CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130865 0.68 0.515082
Target:  5'- gGCGGgggcGGCGccccucaaggccgaAGCGGGGAcugaggcggGGgGCGGCg -3'
miRNA:   3'- -CGCCac--UCGC--------------UCGUCCCU---------CCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130787 0.7 0.369379
Target:  5'- cGCGGUGgaGGCGGccGCGGccggggcGGAGGCggccGCGGCc -3'
miRNA:   3'- -CGCCAC--UCGCU--CGUC-------CCUCCG----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130707 0.67 0.527387
Target:  5'- cGCGGaGuGCGccgaggccgaGGgGGcGGAGGCGCGGa -3'
miRNA:   3'- -CGCCaCuCGC----------UCgUC-CCUCCGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.