miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 134515 0.75 0.200642
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGCUCguCCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 48485 0.76 0.153158
Target:  5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3'
miRNA:   3'- -CGCCa--CUCGC-UCG-------UCCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 27521 0.76 0.156209
Target:  5'- cGCGGcG-GCG-GCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGCuCGUCCCU--------------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 84528 0.76 0.16938
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGCUCGUCCC--UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 103237 0.75 0.182207
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGCUCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 121362 0.75 0.18667
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGCUCguCCC----UCCGcgCCG- -5'
6509 3' -62.1 NC_001847.1 + 87888 0.75 0.189852
Target:  5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCGC--------------UCGUCCC---------UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 77109 0.75 0.19123
Target:  5'- cGCGGU-AGCG-GCGGGGcugcuucaAGGCGCGcGCg -3'
miRNA:   3'- -CGCCAcUCGCuCGUCCC--------UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 109652 0.75 0.200642
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGcuCgUCCCUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 54385 0.77 0.146129
Target:  5'- uGCGGcGGGCGGccGCGGGcGAGGCG-GGCg -3'
miRNA:   3'- -CGCCaCUCGCU--CGUCC-CUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 104886 0.78 0.122706
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGCUCGU------CCCUc--CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 128791 0.78 0.122398
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGCUCGUCC-CUC-CGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 108870 1.03 0.001986
Target:  5'- gGCGGUGAGCaAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGcUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 100535 0.83 0.052553
Target:  5'- cGCGGagUGGGUGGGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGCUCGUCCCU---CC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 43237 0.82 0.063067
Target:  5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCACUCgCuCGU-CCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 130559 0.81 0.079599
Target:  5'- gGCGGauGGUGGGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGCUCGUCCCUCC-GCGCCg -5'
6509 3' -62.1 NC_001847.1 + 66 0.8 0.081674
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGCUCguCCC----UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 84458 0.8 0.081674
Target:  5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3'
miRNA:   3'- -CGCCa-------CUCGCUCgUCCCUCCGCgCCg -5'
6509 3' -62.1 NC_001847.1 + 102662 0.8 0.081674
Target:  5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3'
miRNA:   3'- cGCCaCUCGC--------UCGUCCCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 59550 0.8 0.092844
Target:  5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3'
miRNA:   3'- -CGCCACUCgC-UCGUCCCU-CCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.