miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 47567 0.66 0.644534
Target:  5'- uCGGUGAGCacGGGCAccucgcccGAGGCGUaguGGCg -3'
miRNA:   3'- cGCCACUCG--CUCGUcc------CUCCGCG---CCG- -5'
6509 3' -62.1 NC_001847.1 + 25358 0.66 0.614916
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGc---UCGUCCCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 48184 0.66 0.614916
Target:  5'- gGC-GUGAacaCGGGCucGGGGcGCGCGGCg -3'
miRNA:   3'- -CGcCACUc--GCUCGucCCUC-CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 6151 1.13 0.000408
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGCUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 41627 0.66 0.643547
Target:  5'- cCGGggccgccGGGCGAGUGGGugcggauccacccGAcGCGCGGCa -3'
miRNA:   3'- cGCCa------CUCGCUCGUCC-------------CUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 31964 0.66 0.634661
Target:  5'- cGCGGcgcgcgGGGCGGGCcccGGGGCGCGaaGCc -3'
miRNA:   3'- -CGCCa-----CUCGCUCGuccCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 107043 0.66 0.628735
Target:  5'- gGCGGUGucGCGcGCGgccccGGGcAGGCGCcacagcaccagaccgGGCa -3'
miRNA:   3'- -CGCCACu-CGCuCGU-----CCC-UCCGCG---------------CCG- -5'
6509 3' -62.1 NC_001847.1 + 79404 0.66 0.628735
Target:  5'- cGCGG-GcGCGAGCcGGaccaccguggcgcccGAGG-GCGGCg -3'
miRNA:   3'- -CGCCaCuCGCUCGuCC---------------CUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 56871 0.66 0.624786
Target:  5'- cGCaGa-GGCGAGCAGGcaguccaGGuGCGCGGCg -3'
miRNA:   3'- -CGcCacUCGCUCGUCCc------UC-CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 27385 0.66 0.614916
Target:  5'- cGCGcGauAGCGAGguugcuCGGGGGGGCGCuguugccgccGGCg -3'
miRNA:   3'- -CGC-CacUCGCUC------GUCCCUCCGCG----------CCG- -5'
6509 3' -62.1 NC_001847.1 + 22923 0.66 0.624786
Target:  5'- uGgGGUGGGCuGGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCGuCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 119159 0.66 0.624786
Target:  5'- cGCGGcc-GCc-GCGGGGcGGCGgGGCa -3'
miRNA:   3'- -CGCCacuCGcuCGUCCCuCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 8129 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 18174 0.66 0.618863
Target:  5'- gGCGGUcGGCGucGCAGGGcAgccggagcaccgccaGGCaGCGGUa -3'
miRNA:   3'- -CGCCAcUCGCu-CGUCCC-U---------------CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 74827 0.66 0.644534
Target:  5'- ----cGcGCGAGCAGGu-GGCGCGcGCg -3'
miRNA:   3'- cgccaCuCGCUCGUCCcuCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 43443 0.66 0.624786
Target:  5'- cGCGGUgcccgaGAGCGaAGC-GGGAGcCGCaGCc -3'
miRNA:   3'- -CGCCA------CUCGC-UCGuCCCUCcGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 123147 0.66 0.614916
Target:  5'- aCGG-GuGCGuGCGGuacguuccGGAgacGGCGCGGCg -3'
miRNA:   3'- cGCCaCuCGCuCGUC--------CCU---CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 10330 0.66 0.614916
Target:  5'- gGCGGacGAG-GAG-GGGGAGGagaacgGCGGCg -3'
miRNA:   3'- -CGCCa-CUCgCUCgUCCCUCCg-----CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 25112 0.66 0.644534
Target:  5'- aGCGcaGAGagaagaGAGCGGGcGGcGGCcGCGGCu -3'
miRNA:   3'- -CGCcaCUCg-----CUCGUCC-CU-CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 77824 0.66 0.634661
Target:  5'- uGUGGUuGGCGGuGCAGGGcucacgAGcuCGCGGCc -3'
miRNA:   3'- -CGCCAcUCGCU-CGUCCC------UCc-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.