miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
651 5' -52.4 AC_000017.1 + 28846 0.66 0.755264
Target:  5'- aCCuguuuGGcAGCacUGCAGaCUGCCGCUa -3'
miRNA:   3'- -GGuuuu-UCuUCG--ACGUC-GACGGCGGc -5'
651 5' -52.4 AC_000017.1 + 10782 0.66 0.744256
Target:  5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3'
miRNA:   3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5'
651 5' -52.4 AC_000017.1 + 13667 0.66 0.744256
Target:  5'- uCCGAucuAGgcGCUGCGGCc-CCGCgGu -3'
miRNA:   3'- -GGUUuu-UCuuCGACGUCGacGGCGgC- -5'
651 5' -52.4 AC_000017.1 + 9953 0.66 0.744256
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3'
miRNA:   3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5'
651 5' -52.4 AC_000017.1 + 33249 0.66 0.737588
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCGc -3'
miRNA:   3'- -GGUUUU--UCUu------CGACGUCG---------------ACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 2260 0.66 0.721869
Target:  5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3'
miRNA:   3'- -GGUuuuUCUucGACGucGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 12771 0.66 0.721869
Target:  5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3'
miRNA:   3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 11174 0.67 0.675999
Target:  5'- -gGAGAAGggGagggugccCUGCAuGuCUGCCGCUGc -3'
miRNA:   3'- ggUUUUUCuuC--------GACGU-C-GACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 11118 0.67 0.675999
Target:  5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3'
miRNA:   3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5'
651 5' -52.4 AC_000017.1 + 26854 0.67 0.65273
Target:  5'- gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- gGUUUUUCUU----CGACGUcGACgGCGGc -5'
651 5' -52.4 AC_000017.1 + 12693 0.67 0.65273
Target:  5'- uCCAGGuu--GGuCUGCAcGUUGCCGCUGu -3'
miRNA:   3'- -GGUUUuucuUC-GACGU-CGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 24996 0.67 0.64923
Target:  5'- aCCGAGGAGGgccuacccgcaguuGGCgaugaGCAGCUGgCgCGCUGg -3'
miRNA:   3'- -GGUUUUUCU--------------UCGa----CGUCGAC-G-GCGGC- -5'
651 5' -52.4 AC_000017.1 + 12409 0.68 0.606031
Target:  5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3'
miRNA:   3'- -GGUUUuUCu-UCG--ACGUCGaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 5555 0.68 0.594392
Target:  5'- uCCAAGGGcAAGCUGCGcGCcaagggccaUGCCGCgGa -3'
miRNA:   3'- -GGUUUUUcUUCGACGU-CG---------ACGGCGgC- -5'
651 5' -52.4 AC_000017.1 + 16409 0.68 0.594392
Target:  5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3'
miRNA:   3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 26914 0.68 0.582788
Target:  5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 13690 0.69 0.57123
Target:  5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3'
miRNA:   3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 10343 0.69 0.525652
Target:  5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3'
miRNA:   3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5'
651 5' -52.4 AC_000017.1 + 4973 0.7 0.514464
Target:  5'- --uAAGAG-AGCUGCAGCUG-CGUCa -3'
miRNA:   3'- gguUUUUCuUCGACGUCGACgGCGGc -5'
651 5' -52.4 AC_000017.1 + 26532 0.7 0.481515
Target:  5'- aCCAGGGccGGuAAGUccaaGCAGCcGCCGCCGu -3'
miRNA:   3'- -GGUUUU--UC-UUCGa---CGUCGaCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.