Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
651 | 5' | -52.4 | AC_000017.1 | + | 1970 | 0.71 | 0.439255 |
Target: 5'- aCCGGGgcGc-GCUGCGGCUGCUGuuGc -3' miRNA: 3'- -GGUUUuuCuuCGACGUCGACGGCggC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 2179 | 0.71 | 0.449624 |
Target: 5'- gCAGGAGGAAGCcagGCGGCgGCgGCgGc -3' miRNA: 3'- gGUUUUUCUUCGa--CGUCGaCGgCGgC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 2260 | 0.66 | 0.721869 |
Target: 5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3' miRNA: 3'- -GGUuuuUCUucGACGucGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 3782 | 0.73 | 0.326438 |
Target: 5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCGc -3' miRNA: 3'- -GGUuuuuCUUC-GACGUCGa---CGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 4973 | 0.7 | 0.514464 |
Target: 5'- --uAAGAG-AGCUGCAGCUG-CGUCa -3' miRNA: 3'- gguUUUUCuUCGACGUCGACgGCGGc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 5555 | 0.68 | 0.594392 |
Target: 5'- uCCAAGGGcAAGCUGCGcGCcaagggccaUGCCGCgGa -3' miRNA: 3'- -GGUUUUUcUUCGACGU-CG---------ACGGCGgC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 8674 | 0.7 | 0.47076 |
Target: 5'- gCGGGcAGGAGCUGguGCUG-CGCaCGg -3' miRNA: 3'- gGUUUuUCUUCGACguCGACgGCG-GC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 9953 | 0.66 | 0.744256 |
Target: 5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3' miRNA: 3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 10343 | 0.69 | 0.525652 |
Target: 5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3' miRNA: 3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 10782 | 0.66 | 0.744256 |
Target: 5'- uCCuuccAGgcGCgGCGGCUGCUGCg- -3' miRNA: 3'- -GGuuuuUCuuCGaCGUCGACGGCGgc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 10857 | 0.77 | 0.1784 |
Target: 5'- gCCAAAAA-AAGCUagcGCAGCaGCCGCCGc -3' miRNA: 3'- -GGUUUUUcUUCGA---CGUCGaCGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 11118 | 0.67 | 0.675999 |
Target: 5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3' miRNA: 3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 11174 | 0.67 | 0.675999 |
Target: 5'- -gGAGAAGggGagggugccCUGCAuGuCUGCCGCUGc -3' miRNA: 3'- ggUUUUUCuuC--------GACGU-C-GACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12409 | 0.68 | 0.606031 |
Target: 5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3' miRNA: 3'- -GGUUUuUCu-UCG--ACGUCGaCGGCGGc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12516 | 0.76 | 0.217624 |
Target: 5'- gCGGAGAGccgguuGGcCUGUGGCUGCUGCCGg -3' miRNA: 3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12693 | 0.67 | 0.65273 |
Target: 5'- uCCAGGuu--GGuCUGCAcGUUGCCGCUGu -3' miRNA: 3'- -GGUUUuucuUC-GACGU-CGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12771 | 0.66 | 0.721869 |
Target: 5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3' miRNA: 3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 13667 | 0.66 | 0.744256 |
Target: 5'- uCCGAucuAGgcGCUGCGGCc-CCGCgGu -3' miRNA: 3'- -GGUUuu-UCuuCGACGUCGacGGCGgC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 13690 | 0.69 | 0.57123 |
Target: 5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3' miRNA: 3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 15192 | 0.72 | 0.365196 |
Target: 5'- gCgGAGGAGAAGCgcgcugagGCcgaggcagcggccgaAGCUGCCGCCc -3' miRNA: 3'- -GgUUUUUCUUCGa-------CG---------------UCGACGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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