miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 125074 0.66 0.670024
Target:  5'- cGCGGcgGGGC--GCuGGGcccGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGuuCGuCCCuc-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 87949 0.66 0.669025
Target:  5'- cGCGGUGAGCGuguucaaAGUgauauGGGAagagguguucggGGCcCGGCu -3'
miRNA:   3'- -CGCCACUCGU-------UCGu----CCCU------------CCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 96780 0.66 0.664029
Target:  5'- cCGGUGccGGCGcuggggcugaagcugGGUcGGGGGGCGCGcaGCg -3'
miRNA:   3'- cGCCAC--UCGU---------------UCGuCCCUCCGCGC--CG- -5'
6510 3' -60.3 NC_001847.1 + 42602 0.66 0.660027
Target:  5'- gGUGGUGAcagggacgGCGccgccGCGGaGGGGG-GCGGCa -3'
miRNA:   3'- -CGCCACU--------CGUu----CGUC-CCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 119219 0.66 0.660027
Target:  5'- cGCGGccaccgcgGGGC-GGCGGGGcAGGCauGgGGCc -3'
miRNA:   3'- -CGCCa-------CUCGuUCGUCCC-UCCG--CgCCG- -5'
6510 3' -60.3 NC_001847.1 + 96904 0.66 0.660027
Target:  5'- uCGGUG-GCGuGCuggaacacGGGGGGGUGCGcGUa -3'
miRNA:   3'- cGCCACuCGUuCG--------UCCCUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 68451 0.66 0.660027
Target:  5'- cGCGG-GAGCGcccGCuGuGGAGGCGagGGUu -3'
miRNA:   3'- -CGCCaCUCGUu--CGuC-CCUCCGCg-CCG- -5'
6510 3' -60.3 NC_001847.1 + 17886 0.66 0.660027
Target:  5'- gGCGGccccGCAgAGCAGGauuaGGGCGaCGGCg -3'
miRNA:   3'- -CGCCacu-CGU-UCGUCCc---UCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 18652 0.66 0.659026
Target:  5'- cCGGUGAGCGauccGGCGGGagugcagguacgcGAGGCcccGCaGCa -3'
miRNA:   3'- cGCCACUCGU----UCGUCC-------------CUCCG---CGcCG- -5'
6510 3' -60.3 NC_001847.1 + 127987 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 25174 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 17800 0.67 0.650008
Target:  5'- aCGGgccccAGCGGGCGGGaGGGCgccaugccaguGCGGCg -3'
miRNA:   3'- cGCCac---UCGUUCGUCCcUCCG-----------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 9510 0.67 0.650008
Target:  5'- aGCGGacccGAGcCGAGC-GGGcGGCGCGcuaGCg -3'
miRNA:   3'- -CGCCa---CUC-GUUCGuCCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 102060 0.67 0.650008
Target:  5'- gGCGuGUucGGC-AGCaAGGGcAGGCGCGGg -3'
miRNA:   3'- -CGC-CAc-UCGuUCG-UCCC-UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 8464 0.67 0.650008
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 8062 0.67 0.650008
Target:  5'- cGCGGcccGCGcGCagAGGGGGGCaccgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGUuCG--UCCCUCCG------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 111277 0.67 0.650008
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 25173 0.67 0.650008
Target:  5'- uGCGGauUGAGCAGGUAGcagcuggccaGcGAGccccgcGCGCGGCc -3'
miRNA:   3'- -CGCC--ACUCGUUCGUC----------C-CUC------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 66792 0.67 0.650008
Target:  5'- cCGGcguacgucUGGGCGucGGUAGGcGGGGCGCuGGUc -3'
miRNA:   3'- cGCC--------ACUCGU--UCGUCC-CUCCGCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.