miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 71518 0.66 0.698818
Target:  5'- cGCGGa-GGCAguAGCGGGcgaagggguagcaGAGGCacGCGGCc -3'
miRNA:   3'- -CGCCacUCGU--UCGUCC-------------CUCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 112090 0.66 0.689921
Target:  5'- gGCGGUccGGcGCAAGguGGacuGGCucgaGCGGCg -3'
miRNA:   3'- -CGCCA--CU-CGUUCguCCcu-CCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 90797 0.66 0.689921
Target:  5'- aGCGG-GAGCGAGagcgagAGcGGAgcgagagcaaaGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCg-----UC-CCU-----------CCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 130003 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 50829 0.66 0.689921
Target:  5'- aCGGggGGGCGcugcccgcGCcGGGGGGCGCuGGUg -3'
miRNA:   3'- cGCCa-CUCGUu-------CGuCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 53611 0.66 0.689921
Target:  5'- aCGGUG-GCGGGCGGc--GGgGUGGCa -3'
miRNA:   3'- cGCCACuCGUUCGUCccuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 44265 0.66 0.689921
Target:  5'- uCGGUGAuuacgGCGaucuaccacaccGGCGGcGcGGCGCGGCg -3'
miRNA:   3'- cGCCACU-----CGU------------UCGUCcCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 10127 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 27190 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 112940 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 72394 0.66 0.689921
Target:  5'- gGUGGUGGacGCGGGCcccgacgcGGGGAcGGCcaCGGCc -3'
miRNA:   3'- -CGCCACU--CGUUCG--------UCCCU-CCGc-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 120675 0.66 0.689921
Target:  5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3'
miRNA:   3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 62434 0.66 0.679991
Target:  5'- -aGGUGAGCGuGUuuucGucGGCGCGGCu -3'
miRNA:   3'- cgCCACUCGUuCGuc--CcuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 54695 0.66 0.679991
Target:  5'- gGCGGcGGcGCccGCGGGGAGgacgacGCGCGGg -3'
miRNA:   3'- -CGCCaCU-CGuuCGUCCCUC------CGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 14005 0.66 0.679991
Target:  5'- cGCGccgaGAGCAcggcAGCAGGcGGcGGCGCaGCg -3'
miRNA:   3'- -CGCca--CUCGU----UCGUCC-CU-CCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 13308 0.66 0.678996
Target:  5'- cGCGGUcgucgaggcagacGGGCuccGGCAcGGGcGGCGagcaGGCg -3'
miRNA:   3'- -CGCCA-------------CUCGu--UCGU-CCCuCCGCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 84230 0.66 0.670024
Target:  5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3'
miRNA:   3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 71070 0.66 0.670024
Target:  5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3'
miRNA:   3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125074 0.66 0.670024
Target:  5'- cGCGGcgGGGC--GCuGGGcccGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGuuCGuCCCuc-CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.