miRNA display CGI


Results 21 - 40 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 40377 0.66 0.709633
Target:  5'- aGCGG-----AAGCGGGG-GGCGaCGGCc -3'
miRNA:   3'- -CGCCacucgUUCGUCCCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 102849 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 83180 0.66 0.709633
Target:  5'- aCGGgcuGGCGgacGGCGGGG-GGCGC-GCa -3'
miRNA:   3'- cGCCac-UCGU---UCGUCCCuCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 51054 0.66 0.709633
Target:  5'- aCGGUcGAGCAGGCcaccGAGGCGUucgugcgcgGGCu -3'
miRNA:   3'- cGCCA-CUCGUUCGucc-CUCCGCG---------CCG- -5'
6510 3' -60.3 NC_001847.1 + 49046 0.66 0.709633
Target:  5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGUuCGUC-----CC----UCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 2234 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 105047 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 46774 0.66 0.708653
Target:  5'- cGCGGUaaagaggGGGgGGGgGGGGAGGgcuaCGGCa -3'
miRNA:   3'- -CGCCA-------CUCgUUCgUCCCUCCgc--GCCG- -5'
6510 3' -60.3 NC_001847.1 + 56315 0.66 0.707672
Target:  5'- cGCGGcGGGCGcgcgaaggccguaaaGGCgaAGGGguccacaugcuccgcGGGCGCGGg -3'
miRNA:   3'- -CGCCaCUCGU---------------UCG--UCCC---------------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 2193 0.66 0.706691
Target:  5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 70367 0.66 0.699804
Target:  5'- ----aGAGCGAGgGGGcgccGGGGCGCGaGCu -3'
miRNA:   3'- cgccaCUCGUUCgUCC----CUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 107780 0.66 0.699804
Target:  5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3'
miRNA:   3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 34014 0.66 0.699804
Target:  5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3'
miRNA:   3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 18003 0.66 0.699804
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5'
6510 3' -60.3 NC_001847.1 + 14791 0.66 0.699804
Target:  5'- cGCGGcGuacaaaaccGC-AGCGGcGGAGcuGCGCGGCg -3'
miRNA:   3'- -CGCCaCu--------CGuUCGUC-CCUC--CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 81244 0.66 0.699804
Target:  5'- gGCGGggccgucGCGAGgAcGGGGGGCccgcccgcccccGCGGCg -3'
miRNA:   3'- -CGCCacu----CGUUCgU-CCCUCCG------------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125736 0.66 0.699804
Target:  5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5'
6510 3' -60.3 NC_001847.1 + 11822 0.66 0.699804
Target:  5'- aCGGcacAGCGcGCGGGGGGGgG-GGCg -3'
miRNA:   3'- cGCCac-UCGUuCGUCCCUCCgCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 35177 0.66 0.699804
Target:  5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3'
miRNA:   3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 86634 0.66 0.699804
Target:  5'- aGCGuGUGGGCGGGCcGcgccgccccGGAGcGCGCcGCg -3'
miRNA:   3'- -CGC-CACUCGUUCGuC---------CCUC-CGCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.