Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 5' | -57.3 | NC_001847.1 | + | 103041 | 0.71 | 0.536883 |
Target: 5'- gCGGGCcgCA---GCCgcguuucCCCCCUCCCCc -3' miRNA: 3'- -GUCCGa-GUaaaCGGau-----GGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 109936 | 0.71 | 0.546869 |
Target: 5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3' miRNA: 3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 7123 | 0.71 | 0.546869 |
Target: 5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3' miRNA: 3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 10746 | 0.71 | 0.56701 |
Target: 5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3' miRNA: 3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 113559 | 0.71 | 0.56701 |
Target: 5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3' miRNA: 3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 16031 | 0.7 | 0.577153 |
Target: 5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3' miRNA: 3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 129880 | 0.7 | 0.577153 |
Target: 5'- -uGGaCUUuc--GCCUcaagcGCCCCCUCCCCc -3' miRNA: 3'- guCC-GAGuaaaCGGA-----UGGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 15912 | 0.7 | 0.577153 |
Target: 5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3' miRNA: 3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 87131 | 0.7 | 0.587335 |
Target: 5'- -cGGCUCGgg-GgCUACCUcugcgacaacuuCCUCCCCg -3' miRNA: 3'- guCCGAGUaaaCgGAUGGG------------GGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 103205 | 0.7 | 0.587335 |
Target: 5'- gCAGGCUCGUccGCUUACCCgCCgcgcgagCCgCg -3' miRNA: 3'- -GUCCGAGUAaaCGGAUGGG-GGa------GGgG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 39773 | 0.7 | 0.60779 |
Target: 5'- uCGGGCaugUAUguugcGCCgccugGCCCCgCUCCCCu -3' miRNA: 3'- -GUCCGa--GUAaa---CGGa----UGGGG-GAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 5084 | 0.7 | 0.60779 |
Target: 5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3' miRNA: 3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 107897 | 0.7 | 0.60779 |
Target: 5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3' miRNA: 3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 15483 | 0.7 | 0.618049 |
Target: 5'- gGGGCcgCcgUUGCCcucccgcccggcUGCCCCgUCCUCg -3' miRNA: 3'- gUCCGa-GuaAACGG------------AUGGGGgAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 82106 | 0.69 | 0.628318 |
Target: 5'- aGGGCgccugCGUUUgcGCCUGCCgCCCgacgCCCg -3' miRNA: 3'- gUCCGa----GUAAA--CGGAUGG-GGGa---GGGg -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 120907 | 0.69 | 0.63859 |
Target: 5'- gCGGGCUCGgc-GUUUGCCCUCaccacgCCCCc -3' miRNA: 3'- -GUCCGAGUaaaCGGAUGGGGGa-----GGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 67068 | 0.69 | 0.642699 |
Target: 5'- aGGGUUCAg-UGCCgGCUccagcuuccccuucuCCCUCCCCu -3' miRNA: 3'- gUCCGAGUaaACGGaUGG---------------GGGAGGGG- -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 21454 | 0.69 | 0.648858 |
Target: 5'- -cGGCUCcc---CCUuCCCCCUCCCg -3' miRNA: 3'- guCCGAGuaaacGGAuGGGGGAGGGg -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 124267 | 0.69 | 0.648858 |
Target: 5'- -cGGCUCcc---CCUuCCCCCUCCCg -3' miRNA: 3'- guCCGAGuaaacGGAuGGGGGAGGGg -5' |
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6510 | 5' | -57.3 | NC_001847.1 | + | 66174 | 0.69 | 0.648858 |
Target: 5'- cCGGGCUgGcgccgGCC-GCCCCCUCUUCc -3' miRNA: 3'- -GUCCGAgUaaa--CGGaUGGGGGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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