miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 16031 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 16462 0.67 0.768499
Target:  5'- gGGGCUgCGgcccgGCCcaACCCCCgCCCUg -3'
miRNA:   3'- gUCCGA-GUaaa--CGGa-UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 21080 0.68 0.729784
Target:  5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3'
miRNA:   3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 21454 0.69 0.648858
Target:  5'- -cGGCUCcc---CCUuCCCCCUCCCg -3'
miRNA:   3'- guCCGAGuaaacGGAuGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 21970 0.69 0.669344
Target:  5'- gGGGCUUucg-GCggcgGCCCCCUCgCCg -3'
miRNA:   3'- gUCCGAGuaaaCGga--UGGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 23628 0.68 0.709879
Target:  5'- aAGGUUCugcagUGCgc-CCCCCUCCUCu -3'
miRNA:   3'- gUCCGAGuaa--ACGgauGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 23754 0.74 0.39731
Target:  5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3'
miRNA:   3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 24199 0.73 0.441346
Target:  5'- gAGGCUCGUcgGCCcGCCCg--CCCCg -3'
miRNA:   3'- gUCCGAGUAaaCGGaUGGGggaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 25475 0.67 0.796283
Target:  5'- gCGGGCcaaagCAagcGCCgcCCCCCcCCCCa -3'
miRNA:   3'- -GUCCGa----GUaaaCGGauGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 27045 0.68 0.699822
Target:  5'- --cGCUC----GCCgUACCCCCgUCCCCg -3'
miRNA:   3'- gucCGAGuaaaCGG-AUGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 27456 0.67 0.768499
Target:  5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3'
miRNA:   3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 32057 0.68 0.71987
Target:  5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 32459 0.67 0.768499
Target:  5'- -cGGCgc-----CCUGCCCCCgCCCCg -3'
miRNA:   3'- guCCGaguaaacGGAUGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 38720 0.68 0.709879
Target:  5'- gGGGC-CGc--GCCUGCCgCCggCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAUGGgGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 39773 0.7 0.60779
Target:  5'- uCGGGCaugUAUguugcGCCgccugGCCCCgCUCCCCu -3'
miRNA:   3'- -GUCCGa--GUAaa---CGGa----UGGGG-GAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 39864 0.66 0.805258
Target:  5'- -cGGCcgCAagcUUGCCggcGCCCCCgaucgcgCCCCc -3'
miRNA:   3'- guCCGa-GUa--AACGGa--UGGGGGa------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 40033 0.71 0.536883
Target:  5'- gCAGGCUCGUccGC--GCCCCCaaucgcgCCCCc -3'
miRNA:   3'- -GUCCGAGUAaaCGgaUGGGGGa------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 41263 0.66 0.839494
Target:  5'- gCAGGUgcuUUUGCCcgaGCCCgCguUCCCCg -3'
miRNA:   3'- -GUCCGaguAAACGGa--UGGGgG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 41843 0.66 0.805258
Target:  5'- aGGGCUgGg--GCacguCCCCCUCgCCa -3'
miRNA:   3'- gUCCGAgUaaaCGgau-GGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 44808 0.68 0.709879
Target:  5'- -cGGCUUuggcgGCUgcGCCCCCggCCCCg -3'
miRNA:   3'- guCCGAGuaaa-CGGa-UGGGGGa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.