miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 168 0.68 0.699822
Target:  5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3'
miRNA:   3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 700 0.73 0.414586
Target:  5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3'
miRNA:   3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 2448 0.66 0.839494
Target:  5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 5084 0.7 0.60779
Target:  5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3'
miRNA:   3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 5789 0.79 0.196263
Target:  5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3'
miRNA:   3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 5855 0.69 0.659112
Target:  5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3'
miRNA:   3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 6092 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 6186 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7123 0.71 0.546869
Target:  5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3'
miRNA:   3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7251 0.79 0.187137
Target:  5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3'
miRNA:   3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7553 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7906 0.66 0.839494
Target:  5'- gGGGCgcgCGgcgGCCgccGCUUCUUCCCCc -3'
miRNA:   3'- gUCCGa--GUaaaCGGa--UGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7969 0.66 0.822725
Target:  5'- gCGGGUUUuuaggGCCUgcucggGCCCCCcCUCCa -3'
miRNA:   3'- -GUCCGAGuaaa-CGGA------UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 9531 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 10427 0.68 0.739614
Target:  5'- -cGGUUCGcgcUGCC-GCCCCCgcgcccggcUCCCCu -3'
miRNA:   3'- guCCGAGUaa-ACGGaUGGGGG---------AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 10746 0.71 0.56701
Target:  5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3'
miRNA:   3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 13764 0.68 0.729784
Target:  5'- -cGGUcuUCcuccGCCUugCCCgCUCCCCa -3'
miRNA:   3'- guCCG--AGuaaaCGGAugGGG-GAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 15483 0.7 0.618049
Target:  5'- gGGGCcgCcgUUGCCcucccgcccggcUGCCCCgUCCUCg -3'
miRNA:   3'- gUCCGa-GuaAACGG------------AUGGGGgAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 15912 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 15971 0.67 0.749349
Target:  5'- -cGGUccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.