miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 134870 0.68 0.71987
Target:  5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 130269 0.67 0.768499
Target:  5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3'
miRNA:   3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 129880 0.7 0.577153
Target:  5'- -uGGaCUUuc--GCCUcaagcGCCCCCUCCCCc -3'
miRNA:   3'- guCC-GAGuaaaCGGA-----UGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 129858 0.68 0.699822
Target:  5'- --cGCUC----GCCgUACCCCCgUCCCCg -3'
miRNA:   3'- gucCGAGuaaaCGG-AUGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 128288 0.67 0.796283
Target:  5'- gCGGGCcaaagCAagcGCCgcCCCCCcCCCCa -3'
miRNA:   3'- -GUCCGa----GUaaaCGGauGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 127012 0.73 0.441346
Target:  5'- gAGGCUCGUcgGCCcGCCCg--CCCCg -3'
miRNA:   3'- gUCCGAGUAaaCGGaUGGGggaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 126567 0.74 0.39731
Target:  5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3'
miRNA:   3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 126441 0.68 0.709879
Target:  5'- aAGGUUCugcagUGCgc-CCCCCUCCUCu -3'
miRNA:   3'- gUCCGAGuaa--ACGgauGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 124783 0.69 0.669344
Target:  5'- gGGGCUUucg-GCggcgGCCCCCUCgCCg -3'
miRNA:   3'- gUCCGAGuaaaCGga--UGGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 124267 0.69 0.648858
Target:  5'- -cGGCUCcc---CCUuCCCCCUCCCg -3'
miRNA:   3'- guCCGAGuaaacGGAuGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 123893 0.68 0.729784
Target:  5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3'
miRNA:   3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 123507 0.67 0.749349
Target:  5'- aAGGCUCcaucgUGUCcAUCCCCaUCCUCg -3'
miRNA:   3'- gUCCGAGuaa--ACGGaUGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 122652 0.68 0.709879
Target:  5'- cCGGGUUCuug-GCC-GCCCCCgCCgCCa -3'
miRNA:   3'- -GUCCGAGuaaaCGGaUGGGGGaGG-GG- -5'
6510 5' -57.3 NC_001847.1 + 121265 0.67 0.749349
Target:  5'- uGGGCUCccg-GCCaaaggcGCCCCC-CCUCg -3'
miRNA:   3'- gUCCGAGuaaaCGGa-----UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 120907 0.69 0.63859
Target:  5'- gCGGGCUCGgc-GUUUGCCCUCaccacgCCCCc -3'
miRNA:   3'- -GUCCGAGUaaaCGGAUGGGGGa-----GGGG- -5'
6510 5' -57.3 NC_001847.1 + 120022 0.68 0.739614
Target:  5'- cCGGGUgagcg-GCCUAggCCCUCCCCc -3'
miRNA:   3'- -GUCCGaguaaaCGGAUggGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 118346 0.72 0.497632
Target:  5'- uGGGCUCuuugGCCUGCCCgaUgaCCCCg -3'
miRNA:   3'- gUCCGAGuaaaCGGAUGGG--GgaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 117044 0.67 0.775089
Target:  5'- gGGGCUCGccgaggaggcggaaGCCUcGCCcucgccuccgCCCUCCCCg -3'
miRNA:   3'- gUCCGAGUaaa-----------CGGA-UGG----------GGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 113559 0.71 0.56701
Target:  5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3'
miRNA:   3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 113262 0.67 0.781617
Target:  5'- gCGGGCUCg---GCCUcggcagcgcgccgcaGCCCCCgcaCCaCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGGA---------------UGGGGGa--GG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.