miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 124267 0.69 0.648858
Target:  5'- -cGGCUCcc---CCUuCCCCCUCCCg -3'
miRNA:   3'- guCCGAGuaaacGGAuGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 113559 0.71 0.56701
Target:  5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3'
miRNA:   3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 15912 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 16031 0.7 0.577153
Target:  5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3'
miRNA:   3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 39773 0.7 0.60779
Target:  5'- uCGGGCaugUAUguugcGCCgccugGCCCCgCUCCCCu -3'
miRNA:   3'- -GUCCGa--GUAaa---CGGa----UGGGG-GAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 107897 0.7 0.60779
Target:  5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3'
miRNA:   3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 82106 0.69 0.628318
Target:  5'- aGGGCgccugCGUUUgcGCCUGCCgCCCgacgCCCg -3'
miRNA:   3'- gUCCGa----GUAAA--CGGAUGG-GGGa---GGGg -5'
6510 5' -57.3 NC_001847.1 + 120907 0.69 0.63859
Target:  5'- gCGGGCUCGgc-GUUUGCCCUCaccacgCCCCc -3'
miRNA:   3'- -GUCCGAGUaaaCGGAUGGGGGa-----GGGG- -5'
6510 5' -57.3 NC_001847.1 + 67068 0.69 0.642699
Target:  5'- aGGGUUCAg-UGCCgGCUccagcuuccccuucuCCCUCCCCu -3'
miRNA:   3'- gUCCGAGUaaACGGaUGG---------------GGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 109936 0.71 0.546869
Target:  5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3'
miRNA:   3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 40033 0.71 0.536883
Target:  5'- gCAGGCUCGUccGC--GCCCCCaaucgcgCCCCc -3'
miRNA:   3'- -GUCCGAGUAaaCGgaUGGGGGa------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 118346 0.72 0.497632
Target:  5'- uGGGCUCuuugGCCUGCCCgaUgaCCCCg -3'
miRNA:   3'- gUCCGAGuaaaCGGAUGGG--GgaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108999 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 78307 0.8 0.177938
Target:  5'- uCGGGCggcuggGCC-GCCCCCUCCCCg -3'
miRNA:   3'- -GUCCGaguaaaCGGaUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 110064 0.79 0.187137
Target:  5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3'
miRNA:   3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 108602 0.79 0.196263
Target:  5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3'
miRNA:   3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 126567 0.74 0.39731
Target:  5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3'
miRNA:   3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 103513 0.73 0.414586
Target:  5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3'
miRNA:   3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 68131 0.73 0.423396
Target:  5'- gCGGGCgagCGcgcGUCUGCCCCUUCUCCg -3'
miRNA:   3'- -GUCCGa--GUaaaCGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 127012 0.73 0.441346
Target:  5'- gAGGCUCGUcgGCCcGCCCg--CCCCg -3'
miRNA:   3'- gUCCGAGUAaaCGGaUGGGggaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.