miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 2448 0.66 0.839494
Target:  5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 75954 0.68 0.71987
Target:  5'- -cGGCUCGg--GCUacgacgGCCCCCUCgaCCg -3'
miRNA:   3'- guCCGAGUaaaCGGa-----UGGGGGAGg-GG- -5'
6510 5' -57.3 NC_001847.1 + 122652 0.68 0.709879
Target:  5'- cCGGGUUCuug-GCC-GCCCCCgCCgCCa -3'
miRNA:   3'- -GUCCGAGuaaaCGGaUGGGGGaGG-GG- -5'
6510 5' -57.3 NC_001847.1 + 6092 1.12 0.001118
Target:  5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3'
miRNA:   3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7969 0.66 0.822725
Target:  5'- gCGGGUUUuuaggGCCUgcucggGCCCCCcCUCCa -3'
miRNA:   3'- -GUCCGAGuaaa-CGGA------UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 25475 0.67 0.796283
Target:  5'- gCGGGCcaaagCAagcGCCgcCCCCCcCCCCa -3'
miRNA:   3'- -GUCCGa----GUaaaCGGauGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 113262 0.67 0.781617
Target:  5'- gCGGGCUCg---GCCUcggcagcgcgccgcaGCCCCCgcaCCaCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGGA---------------UGGGGGa--GG-GG- -5'
6510 5' -57.3 NC_001847.1 + 117044 0.67 0.775089
Target:  5'- gGGGCUCGccgaggaggcggaaGCCUcGCCcucgccuccgCCCUCCCCg -3'
miRNA:   3'- gUCCGAGUaaa-----------CGGA-UGG----------GGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 27456 0.67 0.768499
Target:  5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3'
miRNA:   3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 80696 0.68 0.728797
Target:  5'- uCGGGCUCGUcc-CCgcCCCCCUCgucucugCCCg -3'
miRNA:   3'- -GUCCGAGUAaacGGauGGGGGAG-------GGG- -5'
6510 5' -57.3 NC_001847.1 + 50887 0.67 0.758981
Target:  5'- -cGGCguuuuUUUGuCCUcgccGCCCuCCUCCCCc -3'
miRNA:   3'- guCCGagu--AAAC-GGA----UGGG-GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 32459 0.67 0.768499
Target:  5'- -cGGCgc-----CCUGCCCCCgCCCCg -3'
miRNA:   3'- guCCGaguaaacGGAUGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 41263 0.66 0.839494
Target:  5'- gCAGGUgcuUUUGCCcgaGCCCgCguUCCCCg -3'
miRNA:   3'- -GUCCGaguAAACGGa--UGGGgG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 21080 0.68 0.729784
Target:  5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3'
miRNA:   3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7553 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 16462 0.67 0.768499
Target:  5'- gGGGCUgCGgcccgGCCcaACCCCCgCCCUg -3'
miRNA:   3'- gUCCGA-GUaaa--CGGa-UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 13764 0.68 0.729784
Target:  5'- -cGGUcuUCcuccGCCUugCCCgCUCCCCa -3'
miRNA:   3'- guCCG--AGuaaaCGGAugGGG-GAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 32057 0.68 0.71987
Target:  5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 82557 0.66 0.831201
Target:  5'- gCGGGCUCg---GCCUcgGCCgCCgCCUCg -3'
miRNA:   3'- -GUCCGAGuaaaCGGA--UGGgGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 58738 0.67 0.787159
Target:  5'- gGGGUgcccccGCCgcgGCCCCCggcgCCCCc -3'
miRNA:   3'- gUCCGaguaaaCGGa--UGGGGGa---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.