miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 168 0.68 0.699822
Target:  5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3'
miRNA:   3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 122652 0.68 0.709879
Target:  5'- cCGGGUUCuug-GCC-GCCCCCgCCgCCa -3'
miRNA:   3'- -GUCCGAGuaaaCGGaUGGGGGaGG-GG- -5'
6510 5' -57.3 NC_001847.1 + 32459 0.67 0.768499
Target:  5'- -cGGCgc-----CCUGCCCCCgCCCCg -3'
miRNA:   3'- guCCGaguaaacGGAUGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 82557 0.66 0.831201
Target:  5'- gCGGGCUCg---GCCUcgGCCgCCgCCUCg -3'
miRNA:   3'- -GUCCGAGuaaaCGGA--UGGgGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 7123 0.71 0.546869
Target:  5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3'
miRNA:   3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 21454 0.69 0.648858
Target:  5'- -cGGCUCcc---CCUuCCCCCUCCCg -3'
miRNA:   3'- guCCGAGuaaacGGAuGGGGGAGGGg -5'
6510 5' -57.3 NC_001847.1 + 75954 0.68 0.71987
Target:  5'- -cGGCUCGg--GCUacgacgGCCCCCUCgaCCg -3'
miRNA:   3'- guCCGAGUaaaCGGa-----UGGGGGAGg-GG- -5'
6510 5' -57.3 NC_001847.1 + 7553 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 66174 0.69 0.648858
Target:  5'- cCGGGCUgGcgccgGCC-GCCCCCUCUUCc -3'
miRNA:   3'- -GUCCGAgUaaa--CGGaUGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 41263 0.66 0.839494
Target:  5'- gCAGGUgcuUUUGCCcgaGCCCgCguUCCCCg -3'
miRNA:   3'- -GUCCGaguAAACGGa--UGGGgG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 32057 0.68 0.71987
Target:  5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 9531 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 21080 0.68 0.729784
Target:  5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3'
miRNA:   3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 27456 0.67 0.768499
Target:  5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3'
miRNA:   3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 113262 0.67 0.781617
Target:  5'- gCGGGCUCg---GCCUcggcagcgcgccgcaGCCCCCgcaCCaCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGGA---------------UGGGGGa--GG-GG- -5'
6510 5' -57.3 NC_001847.1 + 7969 0.66 0.822725
Target:  5'- gCGGGUUUuuaggGCCUgcucggGCCCCCcCUCCa -3'
miRNA:   3'- -GUCCGAGuaaa-CGGA------UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 90035 0.73 0.40589
Target:  5'- --cGCUCugUUGUCUGCCCCCaCCCCc -3'
miRNA:   3'- gucCGAGuaAACGGAUGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 103041 0.71 0.536883
Target:  5'- gCGGGCcgCA---GCCgcguuucCCCCCUCCCCc -3'
miRNA:   3'- -GUCCGa-GUaaaCGGau-----GGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 103205 0.7 0.587335
Target:  5'- gCAGGCUCGUccGCUUACCCgCCgcgcgagCCgCg -3'
miRNA:   3'- -GUCCGAGUAaaCGGAUGGG-GGa------GGgG- -5'
6510 5' -57.3 NC_001847.1 + 15483 0.7 0.618049
Target:  5'- gGGGCcgCcgUUGCCcucccgcccggcUGCCCCgUCCUCg -3'
miRNA:   3'- gUCCGa-GuaAACGG------------AUGGGGgAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.